Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq831 114 7e-24 seq763 114 7e-24 seq686 114 7e-24 seq141 114 7e-24 seq65 114 7e-24 seq40 114 7e-24 seq20 114 7e-24 seq735 111 9e-23 seq1 111 9e-23 seq1155 102 5e-20 seq11 100 2e-19 seq234 86.0 3e-15 seq121 77.0 2e-12 >seq831 Length=15331 Score = 114 bits (126), Expect = 7e-24 Identities = 99/120 (83%), Gaps = 6/120 (5%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCG-AGCGA--GTCAAAATGATAACATCG 57 ||||||||| ||||||||||||| |||||||| | || | ||||||| |||| | Sbjct 14595 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGAGGGGTCGTCAAAAG---AACACCC 14539 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 14538 TCCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 14479 >seq763 Length=21608 Score = 114 bits (126), Expect = 7e-24 Identities = 99/120 (83%), Gaps = 6/120 (5%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGC-CGAGCG--AGTCAAAATGATAACATCG 57 ||||||||| ||||||||||||| |||||||| ||| | |||||| | |||| | Sbjct 12737 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGAGGGGTCGTCAAA---AGAACACCC 12793 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 12794 TCCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 12853 >seq686 Length=35560 Score = 114 bits (126), Expect = 7e-24 Identities = 99/120 (83%), Gaps = 6/120 (5%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGC-CGAGCG--AGTCAAAATGATAACATCG 57 ||||||||| ||||||||||||| |||||||| ||| | |||||| | |||| | Sbjct 7848 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGAGGGGTCGTCAAA---AGAACACCC 7904 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 7905 TCCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 7964 >seq141 Length=398432 Score = 114 bits (126), Expect = 7e-24 Identities = 99/120 (83%), Gaps = 6/120 (5%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCG-AGCGA--GTCAAAATGATAACATCG 57 ||||||||| ||||||||||||| |||||||| | || | ||||||| |||| | Sbjct 388681 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGAGGGGTCGTCAAAAG---AACACCC 388625 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 388624 TCCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 388565 >seq65 Length=559413 Score = 114 bits (126), Expect = 7e-24 Identities = 99/120 (83%), Gaps = 6/120 (5%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGC-CGAGCG--AGTCAAAATGATAACATCG 57 ||||||||| ||||||||||||| |||||||| ||| | |||||| | |||| | Sbjct 117675 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGAGGGGTCGTCAAA---AGAACACCC 117731 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 117732 TCCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 117791 >seq40 Length=674714 Score = 114 bits (126), Expect = 7e-24 Identities = 99/120 (83%), Gaps = 6/120 (5%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGC-CGAGCG--AGTCAAAATGATAACATCG 57 ||||||||| ||||||||||||| |||||||| ||| | |||||| | |||| | Sbjct 177850 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGAGGGGTCGTCAAA---AGAACACCC 177906 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 177907 TCCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 177966 >seq20 Length=848245 Score = 114 bits (126), Expect = 7e-24 Identities = 99/120 (83%), Gaps = 6/120 (5%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCG-AGCGA--GTCAAAATGATAACATCG 57 ||||||||| ||||||||||||| |||||||| | || | ||||||| |||| | Sbjct 383175 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGAGGGGTCGTCAAAAG---AACACCC 383119 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 383118 TCCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 383059 >seq735 Length=27027 Score = 111 bits (122), Expect = 9e-23 Identities = 99/120 (83%), Gaps = 7/120 (6%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCG-AGCGA--GTCAAAATGATAACATCG 57 ||||||||| ||||||||||||| |||||||| | || | ||||||| |||| | Sbjct 26189 GAACCCAAA-ACTTTGATTTCTCATAAGGTGCTGGAGGGGTCGTCAAAAG---AACACCC 26134 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 26133 TCCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 26074 >seq1 Length=1870169 Score = 111 bits (122), Expect = 9e-23 Identities = 97/119 (82%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGATAACATCGC 58 ||||||||| ||||||||||||| |||||||| | | ||| ||| || ||| | Sbjct 38877 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGAGGGGTCGTCAAAGGA--ACACCCT 38820 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 38819 CCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 38761 Score = 109 bits (120), Expect = 3e-22 Identities = 98/120 (82%), Gaps = 6/120 (5%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCG-AGCGA--GTCAAAATGATAACATCG 57 ||||||||| ||| ||||||||| |||||||| | || | ||||||| |||| | Sbjct 794864 GAACCCAAAAACTCTGATTTCTCATAAGGTGCTGGAGGGGTCGTCAAAAG---AACACCT 794808 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 794807 TCCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 794748 >seq1155 Length=6983 Score = 102 bits (112), Expect = 5e-20 Identities = 97/120 (81%), Gaps = 8/120 (7%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCG-AGCGA--GTCAAAATGATAACATCG 57 ||||||||| ||||||||||||| || ||||| | || | |||||| |||| | Sbjct 2725 GAACCCAAAAACTTTGATTTCTCATA-GGTGCTGGAGGGGTCGTCAAAG----AACACCC 2779 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 2780 TCCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 2839 >seq11 Length=902617 Score = 100 bits (110), Expect = 2e-19 Identities = 96/120 (80%), Gaps = 6/120 (5%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCG-AGCGA--GTCAAAATGATAACATCG 57 ||||||||| |||||||||| || |||||||| | || | ||||||| |||| | Sbjct 711934 GAACCCAAAAACTTTGATTTTTCATAAGGTGCTGGAGGGGTCGTCAAAAG---AACACCC 711878 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || || |||||||||||| |||| |||| |||||| |||||||||| ||||||||||| Sbjct 711877 TCCAATGCCTAGTCGGCATCATTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 711818 >seq234 Length=270149 Score = 86.0 bits (94), Expect = 3e-15 Identities = 85/106 (80%), Gaps = 7/106 (7%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCG-AGCGA--GTCAAAATGATAACATCG 57 ||||||||| |||| |||||||| |||||||| | || | ||||||| |||| | Sbjct 33109 GAACCCAAAAACTT-GATTTCTCATAAGGTGCTGGAGGGGTCGTCAAAAG---AACACCC 33164 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTAT 103 || ||||||||||||||| ||||| |||| |||||| |||||||| Sbjct 33165 TCCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTAT 33210 >seq121 Length=427588 Score = 77.0 bits (84), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 16/129 (12%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTC----TCGTAAGGTGCCG-AGCGA--GTCAAAATGATAAC 53 |||||| || ||||||||||| || ||||||| | || | ||||||| ||| Sbjct 414620 GAACCCTAAAACTTTGATTTCGAAATCA-AAGGTGCTGGAGGGGCCGTCAAAAG---AAC 414675 Query 54 ATCGCCCGATCCCTA-----GTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 | | || ||||||| |||||||| ||||| |||| |||||| |||||||||| || Sbjct 414676 ACCCTCCAATCCCTACTATAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAAT 414735 Query 109 CGTCTTCGA 117 ||||||||| Sbjct 414736 CGTCTTCGA 414744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278392819890