Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq357 197 4e-48 seq323 111 4e-22 >seq357 Length=166735 Score = 197 bits (218), Expect = 4e-48 Identities = 227/303 (75%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 36 CAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGT 95 |||||||||||||||||| ||| ||||||||||| |||| ||| |||||||||||||| Sbjct 77708 CAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGATTTATTGGGCGTAAAGCGT 77767 Query 96 GCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTT 155 | ||| || ||| | ||| |||| | |||||||||| ||| ||| | Sbjct 77768 CCTGAGGTGGCCTGCCAAGTCTTCTGTAAAATAGCAGGGCTTAACCCTGGAGATGCGATG 77827 Query 156 GTGACT-GCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAAT 214 | ||| ||| | ||||||| || || || | |||||||| ||||||| ||||||| Sbjct 77828 GAAACTAGCA-GGCTAGAGTATGGTAGGGGCAGAGGGAATTCCCGGTGTAGCGGTGAAAT 77886 Query 215 GCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCT 274 || |||| || ||| |||||||||||||||| ||| | ||||| || |||||| || Sbjct 77887 GCATAGAGATCGGGAAGAACACCAATGGCGAAAGCACTCTGCTGGGCCAATACTGACACT 77946 Query 275 CATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAAC 334 | |||||||| ||| |||||| ||||||||||||| ||||||| ||| ||||| Sbjct 77947 GAAAGACGAAAGCTAGGGCAGCAAAAGGGATTAGATACCCCTGTAGTCCTAGCCGTAAAC 78006 Query 335 GAT 337 ||| Sbjct 78007 GAT 78009 >seq323 Length=182909 Score = 111 bits (122), Expect = 4e-22 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAG 251 |||||| || ||| ||||| ||| |||| || ||| |||||||||||||||| ||| Sbjct 87017 AATTCCCGATGGAGCGGTGAATTGCATAGAGATTGGGAAGAACACCAATGGCGAAAGCAC 87076 Query 252 CCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 311 | ||||| || |||||| || | |||||| | |||||||||| |||||||||| Sbjct 87077 TCTGCTGGGCCAATACTGACACTGAAAGACGAAATCTAGGGGAGCAAATGGGATTAGATA 87136 Query 312 CCCTGGTAGTCCACGCCCTAAACGAT 337 ||| ||||||| ||| |||||||| Sbjct 87137 CCCCTGTAGTCCTAGCCGTAAACGAT 87162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289564523104