Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq78 159 1e-36 seq93 104 8e-20 seq8 75.2 4e-11 >seq78 Length=529014 Score = 159 bits (176), Expect = 1e-36 Identities = 302/438 (69%), Gaps = 25/438 (6%) Strand=Plus/Minus Query 102 ATCCAGTGCTCTACCTCCGGGAAGAAACA---CGCGAC-GCTGCACCTAAATGCATTTCG 157 |||||||||| |||| || || | | || | | || ||||| | | | |||||||| Sbjct 290199 ATCCAGTGCTTTACCCCCAGGCA-ATTCATTTCTCAACCGCTGCGCTTCGACGCATTTCG 290141 Query 158 GGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCC 217 |||||||||||||| | | |||| ||| || ||||||||||| ||||| ||||||| Sbjct 290140 GGGAGAACCAGCTAGCTCCGAGTTAGATAGGTATTTCACCCCTAACCACAACTCATCCCA 290081 Query 218 TCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGC 277 | | |||||| | ||||||| ||| ||||| |||| ||| | |||||| |||| Sbjct 290080 CAATTGTTCAACATCGATGGGTTCTGTCTTCCACACGGTGTTAACTAGGCTTCATCCTGG 290021 Query 278 CCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGAC 337 |||||| |||||||| | |||||||| | | || | ||||||| | |||| Sbjct 290020 CCATGGTTAGATCACCCGGGTTCGGGTCCATAAGAAGTGACGGAAACGCCCTGTGAGGAC 289961 Query 338 TCGCTTTCGCTACGGCTACCCCACACGGGTTAACCT----CGCGACACAACGCA-AACTC 392 | | |||| | |||| | | | || ||| | |||||| | | || || Sbjct 289960 TTGTTTTCAATCTGGCTTCGGGTC---GTTTCCCCTTACCCACGACACTCCCTACAAGTC 289904 Query 393 GCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCG 452 || |||||||||||| | |||||||| |||| ||| || | | |||| Sbjct 289903 GCCGGCTCATTCTTCCACAGGCACGCGGTCA--GGGTCTCT---------TACCCCTCCC 289855 Query 453 ACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACT-TTTCA 511 || | |||| | | ||| || ||||| ||||||||||| |||||| || ||||| Sbjct 289854 ACAGCTTGTCAGATAACAGTTCCATGTACTTTTTCACTCCCCTGAAGGGGTTCTCTTTCA 289795 Query 512 CCTTTCCCTCACGGTACT 529 |||||||||| ||||||| Sbjct 289794 CCTTTCCCTCGCGGTACT 289777 >seq93 Length=504211 Score = 104 bits (114), Expect = 8e-20 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 184 ATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGG 243 |||||| ||||||||||| ||||| ||||||| | |||||||| | ||||||||| Sbjct 240155 ATTGGCATTTCACCCCTAACCACAACTCATCCCACGATTTTTCAACATCGATGGGTTCGG 240214 Query 244 TCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGG 303 || || || ||| |||||| |||||| |||| |||||| |||||||| | |||||| Sbjct 240215 TCTTCAACTTGGTGTTACCCAAGCTTCATCCTGGCCATGGTTAGATCACCAGGGTTCGGG 240274 Query 304 TC 305 || Sbjct 240275 TC 240276 >seq8 Length=935761 Score = 75.2 bits (82), Expect = 4e-11 Identities = 73/93 (78%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAA 566 ||||||||||||||| |||||| || |||||||||||| ||||||||| | ||| Sbjct 763674 TTTCACCTTTCCCTCGCGGTACGCATC-GCTATCGGTCACTCTGGAGTATTTTGCGTTAC 763616 Query 567 CGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||| |||||||| ||| |||||| Sbjct 763615 GAGGTGGTCCTCGCAGATTCATACGGGATTTCA 763583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817549997824