Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq831 140 3e-31 seq763 140 3e-31 seq735 140 3e-31 seq686 140 3e-31 seq141 140 3e-31 seq65 140 3e-31 seq40 140 3e-31 seq20 140 3e-31 seq1 136 4e-30 seq121 132 5e-29 seq1155 129 6e-28 seq234 127 2e-27 seq11 96.9 4e-18 >seq831 Length=15331 Score = 140 bits (154), Expect = 3e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||||| |||| ||||| ||| |||||| Sbjct 14236 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATATGTTAGCATGGA 14295 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 14296 ATAACGCGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 14352 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 14353 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 14410 >seq763 Length=21608 Score = 140 bits (154), Expect = 3e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||||| |||| ||||| ||| |||||| Sbjct 13096 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATATGTTAGCATGGA 13037 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 13036 ATAACGCGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 12980 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 12979 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 12922 >seq735 Length=27027 Score = 140 bits (154), Expect = 3e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||||| |||| ||||| ||| |||||| Sbjct 25831 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATATGTTAGCATGGA 25890 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 25891 ATAACGCGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 25947 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 25948 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 26005 >seq686 Length=35560 Score = 140 bits (154), Expect = 3e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||||| |||| ||||| ||| |||||| Sbjct 8207 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATATGTTAGCATGGA 8148 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 8147 ATAACGCGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 8091 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 8090 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 8033 >seq141 Length=398432 Score = 140 bits (154), Expect = 3e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||||| |||| ||||| ||| |||||| Sbjct 388322 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATATGTTAGCATGGA 388381 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 388382 ATAACGCGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 388438 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 388439 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 388496 >seq65 Length=559413 Score = 140 bits (154), Expect = 3e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||||| |||| ||||| ||| |||||| Sbjct 118034 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATATGTTAGCATGGA 117975 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 117974 ATAACGCGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 117918 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 117917 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 117860 >seq40 Length=674714 Score = 140 bits (154), Expect = 3e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||||| |||| ||||| ||| |||||| Sbjct 178209 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATATGTTAGCATGGA 178150 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 178149 ATAACGCGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 178093 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 178092 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 178035 >seq20 Length=848245 Score = 140 bits (154), Expect = 3e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||||| |||| ||||| ||| |||||| Sbjct 382816 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATATGTTAGCATGGA 382875 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 382876 ATAACGCGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 382932 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 382933 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 382990 >seq1 Length=1870169 Score = 136 bits (150), Expect = 4e-30 Identities = 139/178 (78%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||||| |||| ||||| ||| |||||| Sbjct 794505 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATATGTTAGCATGGA 794564 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | | |||| |||| ||| | | |||| | |||||||| | Sbjct 794565 ATAACGCGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACTGGA-GTAATGATTA 794621 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 794622 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 794679 Score = 127 bits (140), Expect = 2e-27 Identities = 137/178 (77%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||| ||||||| |||| ||||| ||| |||||| Sbjct 38518 TTACTTTGAGTAAATTAGAGTGTTCAAACCAGGCCTACGCTCTGAATATGTTAGCATGGA 38577 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | | |||| |||| ||| | | || | | |||||||| | Sbjct 38578 ATAACGCGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGCCTGGA-GTAATGATTA 38634 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | |||| |||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 38635 AGAGGGATGGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 38692 >seq121 Length=427588 Score = 132 bits (146), Expect = 5e-29 Identities = 137/176 (78%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||||| |||| ||||| ||| |||||| Sbjct 414987 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATAGGTTAGCATGGA 414928 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | | |||| |||| ||| | | || ||| || ||||| | Sbjct 414927 ATAACGCGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGCCCGGA-GTTATGATTA 414871 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | | ||| ||||||||| | ||||| ||||||||||||||||||||||||||| Sbjct 414870 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAAAGGTGAAATTCTTGGATTT 414815 >seq1155 Length=6983 Score = 129 bits (142), Expect = 6e-28 Identities = 137/177 (77%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAA 73 ||||||||| || |||||| ||||||||||||||| |||| ||| ||| ||||||| Sbjct 3080 TTACTTTGAGTAA-TTAGAGTGTTCAAAGCAGGCCTACGCTCTGATATGTTAGCATGGAA 3022 Query 74 TAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAA 133 ||| ||||||| | | |||| |||| ||| | | |||||| |||||||| || Sbjct 3021 TAACGCGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTAA 2965 Query 134 TACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 2964 GAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 2908 >seq234 Length=270149 Score = 127 bits (140), Expect = 2e-27 Identities = 137/178 (77%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||||| |||| ||||| ||| |||||| Sbjct 55641 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATATGTTAGCATGGA 55582 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 55581 ATAACGTGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 55525 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| | ||||||| | ||||| ||||||| | |||||| |||||||||||| Sbjct 55524 AGAGGGACAATCGGGGGCATTCGTATTTCATTGTCAGAAGTGAAAGTCTTGGATTTAT 55467 >seq11 Length=902617 Score = 96.9 bits (106), Expect = 4e-18 Identities = 131/178 (74%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 || |||||| ||| |||| ||||||||||||||| |||| ||||| ||| |||||| Sbjct 711570 TTGCTTTGAGTAAAAGAGAGTGTTCAAAGCAGGCCTACGCTCTGAATATGTTAGCATGGA 711629 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| |||| || | | |||| |||| ||| | | |||| | |||||| | Sbjct 711630 ATAACCCGATAGAAC--TCTGGCCTATCTTGTTGGTCTGTGCAACCG-GAGCAATGATTA 711686 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||| || |||||||||||| Sbjct 711687 AGAAGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTG-AACTCTTGGATTTAT 711743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511986355040