Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq357 224 2e-56 seq323 116 9e-24 >seq357 Length=166735 Score = 224 bits (248), Expect = 2e-56 Identities = 277/376 (74%), Gaps = 2/376 (1%) Strand=Plus/Plus Query 34 CAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGT 93 |||||||||||||||||| ||| || ||||||||||||| ||| ||||||||||| || Sbjct 77708 CAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGATTTATTGGGCGTAAAGCGT 77767 Query 94 GCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTT 153 | |||||| | ||||| || ||| | |||| ||||| || ||| | Sbjct 77768 CCTGAGGTGGCCTGCCAAGTCTTCTGTAAAATAGCAGGGCTTAACCCTGGAGATGCGATG 77827 Query 154 GAAACT-GCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAAT 212 |||||| ||| ||||||||| | ||||||| |||||||| ||||||||||||||| Sbjct 77828 GAAACTAGCA-GGCTAGAGTATGGTAGGGGCAGAGGGAATTCCCGGTGTAGCGGTGAAAT 77886 Query 213 GCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACT 272 || |||| || ||| |||||||| ||||||| || |||||| | ||||||||| Sbjct 77887 GCATAGAGATCGGGAAGAACACCAATGGCGAAAGCACTCTGCTGGGCCAATACTGACACT 77946 Query 273 GAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAAC 332 || ||||||| ||| |||||| ||||||||||||| ||||||| ||||||||| Sbjct 77947 GAAAGACGAAAGCTAGGGCAGCAAAAGGGATTAGATACCCCTGTAGTCCTAGCCGTAAAC 78006 Query 333 GATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTA 392 |||| | |||| ||||| | | || ||||| | ||| ||||| ||||| Sbjct 78007 GATGGACACTAAGTGTCTGTATCTAAAACGATATGGGTGCTGTAGCTAACGCGTTAAGTG 78066 Query 393 TTCCACCTGGGGAGTA 408 | ||||||||| |||| Sbjct 78067 TCCCACCTGGGAAGTA 78082 >seq323 Length=182909 Score = 116 bits (128), Expect = 9e-24 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||||| || ||||||||| ||| |||| ||| ||| |||||||| ||||||| || Sbjct 87017 AATTCCCGATGGAGCGGTGAATTGCATAGAGATTGGGAAGAACACCAATGGCGAAAGCAC 87076 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 |||||| | ||||||||||| ||||| | |||||||||| |||||||||| Sbjct 87077 TCTGCTGGGCCAATACTGACACTGAAAGACGAAATCTAGGGGAGCAAATGGGATTAGATA 87136 Query 310 CCCTGGTAGTCCACGCCGTAAACGATG 336 ||| ||||||| ||||||||||||| Sbjct 87137 CCCCTGTAGTCCTAGCCGTAAACGATG 87163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203166899968