Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq78 125 2e-26 seq93 111 5e-22 >seq78 Length=529014 Score = 125 bits (138), Expect = 2e-26 Identities = 140/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 4 AGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 ||||| |||||||| | ||| || | | |||||||| || |||||||| ||||| Sbjct 289960 AGTCCTCACAGGGCGTTTCCGTCACTTCTTATGGACCCGAACCCGGGTGATCTAACCATG 290019 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||||||||||| | |||||| |||| | | ||||||| |||||||| |||| Sbjct 290020 GCCAGGATGAAGCCTAGTTAACACCGTGTGGAAGACAGAACCCATCGATGTTGAACAATT 290079 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 |||||||| ||||| ||||||||||| | | | |||| ||| |||||||||||| Sbjct 290080 GTGGGATGAGTTGTGGTTAGGGGTGAAATACCTATCTAACTCGGAGCTAGCTGGTTCTCC 290139 Query 182 CCGAAA 187 |||||| Sbjct 290140 CCGAAA 290145 >seq93 Length=504211 Score = 111 bits (122), Expect = 5e-22 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| || |||||||| ||||||||||||||||| | |||||||| | || Sbjct 240276 GACCCGAACCCTGGTGATCTAACCATGGCCAGGATGAAGCTTGGGTAACACCAAGTTGAA 240217 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 | ||||||||| |||||||||||| |||||||| ||||| ||||||||||| || | Sbjct 240216 GACCGAACCCATCGATGTTGAAAAATCGTGGGATGAGTTGTGGTTAGGGGTGAAATGCCA 240157 Query 155 A 155 | Sbjct 240156 A 240156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689553519104