Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1576 318 9e-85 >seq1576 Length=4472 Score = 318 bits (352), Expect = 9e-85 Identities = 227/256 (89%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 2130 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGCATT-C 2187 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||| || ||||||||| ||||||||||||||||| | | |||||||||||| Sbjct 2188 CTCGTTGAAGACTAATAATTGCAATAATCTATCCCCATCACGACGCAGTTTCAAAGATTA 2247 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||| |||||||||| |||| |||||||||| | |||||||||||||||||||| Sbjct 2248 CCCGGACCTCTCGGCCAAGG--ATAGGCTCGTTGAATGCGTCAGTGTAGCGCGCGTGCGG 2305 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||| |||||| |||||| | | ||||| | Sbjct 2306 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCACACTTCCATTGGCTAAACG 2365 Query 241 GCCAT-CTCCCTCGAA 255 | || |||||| || Sbjct 2366 CCAATAGTCCCTCTAA 2381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751981547095