Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1576 257 7e-66 seq1940 152 2e-34 seq961 147 9e-33 >seq1576 Length=4472 Score = 257 bits (284), Expect = 7e-66 Identities = 240/303 (79%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||||||||| || | || || || ||||||||| |||||||||||||||||||||||| Sbjct 816 GATGCTGGCAGAAGGTTTTCAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAT 757 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAA 500 ||||||||| |||||| |||||| || ||| || || ||| || || || Sbjct 756 GTATGCGAGTTGGTGGGTGGAAAACCCATGAAGCGCAAGTAACCTGACTGG---TGTGAT 700 Query 501 CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCAT 560 | || | |||| |||||||||| | |||| | | || | ||||||| |||||| Sbjct 699 GGCCTGTGCCTGCAACATCGACCGACCATGATCTTCTGTGAAAGGTTTGAGTGCGAGCAT 640 Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 639 ACCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGTGAAGCCAGAGGAAACT 580 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 |||||||||||||| || || ||| ||||||||||| | || | ||||||||||||| Sbjct 579 CTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTATAGGGG 520 Query 681 CGA 683 ||| Sbjct 519 CGA 517 Score = 217 bits (240), Expect = 6e-54 Identities = 150/170 (88%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||||| |||||||||||||||||| | ||||||||||||||| ||||||| | Sbjct 1159 TTCCACGAGTCGGGTTGTTTGGGAATGCAGCCCAAAATGGGAGGTAAATCCCTTCTAAGG 1100 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 1099 CTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 1040 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||| |||||||||||||||| | |||||||||||| ||||||||| ||| Sbjct 1039 TTGAAAAGAGAGTTAAAAAGTGCTTGAAATTGTTGAGAGGGAAGCGATTG 990 >seq1940 Length=2426 Score = 152 bits (168), Expect = 2e-34 Identities = 110/127 (87%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 511 TGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 |||| |||||||||| | |||| | | || | ||||||| ||||||| |||||||| Sbjct 127 TGCAACATCGACCGACCATGATCTTCTGTGAAAGGTTTGAGTGCGAGCATACCTGTTGGG 186 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 187 ACCCGAAAGATGGTGAACTATGCCTGAGCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 246 Query 631 CTCGCAG 637 |||| || Sbjct 247 CTCGTAG 253 >seq961 Length=14420 Score = 147 bits (162), Expect = 9e-33 Identities = 101/114 (89%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||||| |||||||||||||||||| | ||||||||||||||| ||||||| | Sbjct 3213 TTCCACGAGTCGGGTTGTTTGGGAATGCAGCCCAAAATGGGAGGTAAATCCCTTCTAAGG 3154 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 |||||||||||| |||||||||||||| ||||||| |||| ||||||||||| Sbjct 3153 CTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAA 3100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079945667150