Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1367 134 2e-29 >seq1367 Length=6375 Score = 134 bits (148), Expect = 2e-29 Identities = 178/248 (72%), Gaps = 22/248 (9%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || ||| || | ||||| | ||| || Sbjct 4815 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTAC-GACTTTGCGG 4757 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| ||||||||||| | || || |||||||| Sbjct 4756 AGACCTGTGTTTTTGATAAACAGTCGCCTGGGCCTGGTCACTGCGACC------------ 4709 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | ||| | || ||| |||||||| ||||||||||||||||| |||||||| Sbjct 4708 ---CTTTGTTAA-----AG-GGCGCCCCTTCTTCCGAAGTTACGGGGCCAGTTTGCCGAG 4658 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | ||||| | || | |||| |||||||||||| | |||||||||||| Sbjct 4657 TTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTACCAACCTACCTGTGTCGGT 4598 Query 241 TTACGGTA 248 || |||| Sbjct 4597 TTTAGGTA 4590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694382960509