Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1904 399 4e-109 seq423 107 3e-21 seq191 91.5 3e-16 seq1367 78.8 2e-12 >seq1904 Length=2618 Score = 399 bits (442), Expect = 4e-109 Identities = 268/295 (91%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGA-CGGTC-ATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| ||||||| || || | || ||||| | |||||||||||||||||||||||| Sbjct 1085 TACTGAGCCGAATTACTAT-GGCGAGATCGGTCCAACAGTAGGGTAAAACTAACCTGTCT 1143 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1144 CACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGT 1203 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1204 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 1263 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1264 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGC 1323 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| | ||||||||||||||||||| |||||| |||||||||| Sbjct 1324 TTCAAATCCCGAAAGGCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 1378 >seq423 Length=53181 Score = 107 bits (118), Expect = 3e-21 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||||||||| |||||| || |||||||||||||||||||||||||||||| ||||||| Sbjct 27648 TTCTGCTTCACTATGATGCGAGGAGCCGACATCGAAGGATCAAAAAGCAACGCCGCTATG 27589 Query 182 AACGCTTGGCTGCC 195 |||||||||||||| Sbjct 27588 AACGCTTGGCTGCC 27575 >seq191 Length=110962 Score = 91.5 bits (100), Expect = 3e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 70161 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGACTTCC 70220 Query 126 GCT 128 ||| Sbjct 70221 GCT 70223 >seq1367 Length=6375 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 5569 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACC 5510 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | ||| | | ||| || ||||||||||||| | |||| Sbjct 5509 CTTGGAACGTACTACCGCTCC---AGGATGCGATGAGCCGACATCGAGGTGCCAAACCTT 5453 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | |||| ||||||||| ||||||||| Sbjct 5452 CCCGTCGATGTGAACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 5398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854378358048