Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1367 255 1e-65 seq1323 116 8e-24 seq1123 87.8 4e-15 seq904 78.8 2e-12 >seq1367 Length=6375 Score = 255 bits (282), Expect = 1e-65 Identities = 260/335 (78%), Gaps = 13/335 (4%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||||| |||||||||| | | |||||||||||| || |||||||||||||||| Sbjct 1064 TTTACAATCAATAGACCTTCTTCCTC-CACGCGGCATTG-CTCCATCAGGCTTTCGCCCA 1007 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1006 TTGTGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 947 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTA-CCTCA 180 ||| ||||||||||||||||||||| ||| |||||| ||||||| ||| ||| || || Sbjct 946 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTGGCCTTGGGAGGCCTTTACCCCCA 887 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| | | | || | ||| | |||| | | ||| ||| Sbjct 886 CCAACTAGCTAATCAGCCGCAAGCCCCTCTTTTGGCGC---------GGTTTCCCGCCTT 836 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || | | | | | ||| || ||||||||| |||||| | |||||||||| | | || Sbjct 835 TCACTCCTCAG-CTCATGGGGAATTAGCGTCGGTTTCCCGATGTTATCCCCCTCCAAAAG 777 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 | || ||| || | |||| |||||||||||| || Sbjct 776 GTAGGTTCTTACGTGTTACGCACCCGTCCGCCACT 742 >seq1323 Length=6941 Score = 116 bits (128), Expect = 8e-24 Identities = 90/106 (85%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 90 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTA 149 ||||||||||||| || ||||||||| |||||||| ||||||| ||||||||||||| || Sbjct 1973 CGTAGGAGTCTGGGCCATGTCTCAGTCCCAGTGTGGCTGATCAACCTCTCAGACCAGCTA 2032 Query 150 CGGATCGTCGCCTTGGTGAGCCATTA-CCTCACCAACTAGCTAATC 194 | |||||| ||||||| ||| ||| || ||||||| ||||||| Sbjct 2033 CTGATCGTGGCCTTGGGAGGCCTTTACCCCCACCAACACGCTAATC 2078 >seq1123 Length=10053 Score = 87.8 bits (96), Expect = 4e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 98 TCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGT 157 || ||| |||||||||| |||||||| ||||||||||||||||||||| ||| |||||| Sbjct 1420 TCAGGAAGGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGT 1361 Query 158 CGCCTTGG 165 ||||||| Sbjct 1360 GGCCTTGG 1353 >seq904 Length=16060 Score = 78.8 bits (86), Expect = 2e-12 Identities = 60/70 (86%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 126 CTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCC-ATTACCTCACCAA 184 ||||||||||||||||||||| ||| |||||| ||||||| ||| || || |||||| Sbjct 9830 CTGATCATCCTCTCAGACCAGCTACTGATCGTGGCCTTGGGAGGCCTTTTCCCCCACCAA 9889 Query 185 CTAGCTAATC 194 |||||||||| Sbjct 9890 CTAGCTAATC 9899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071972846240