Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1367 197 3e-48 >seq1367 Length=6375 Score = 197 bits (218), Expect = 3e-48 Identities = 296/401 (74%), Gaps = 21/401 (5%) Strand=Plus/Minus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 ||||||||| |||||||||| |||||| ||||| ||||||||| ||| || |||| Sbjct 3737 TTTTTCAACATCGGTCGGTTCGGACCTCCACTTAGT-GTTACCCAAGCTT-CATCCTGGT 3680 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACT-AGACGCCCTAGTAAG 147 ||| | |||||| ||||| || |||||| | | |||| | |||||||| | || Sbjct 3679 CAT-GATTAGATCACCCGGGTT-CGGGTCCAGAGGAAAT-GACTTAAACGCCCTATTCAG 3623 Query 148 ACTCGCTTTTCGCTACGCCTCCC----CTATTCGGTTAAGCTTT-GCCACTGAAAATAAG 202 ||||||||| ||| | |||| | | || |||| ||| |||||| |||| Sbjct 3622 ACTCGCTTT-CGCGTTGGCTCCGGATACAACTCC-TTAACCTTAAGCCACTCCCTCTAAG 3565 Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACC-CAACAAAGTGGGCTCCCACTGCTT 261 |||| | | |||| | ||| ||| |||| |||| | | || |||||||||||| Sbjct 3564 TCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGGGCCATAACCC---CTCCCACTGCTT 3508 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 || ||||||||||||| | |||||||||||||||| | ||||| |||||| ||||||| Sbjct 3507 GTCAGCATACGGTTTCATGTTCTATTTCACTCCCCTA-CGGGGGTACTTTTCACCTTTCC 3449 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT-TAGCCTT-GGAGGATGGTCC 379 ||| ||||||| |||||||||||||| |||| |||||| ||||||| |||| |||||| Sbjct 3448 CTCGCGGTACTCTTTCACTATCGGTCACTCAGGAGTATTATAGCCTTACGAGG-TGGTCC 3390 Query 380 CCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | ||||| || || | |||| || | ||||||| Sbjct 3389 TCGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 3349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241568550272