Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1367 215 1e-53 seq1323 114 3e-23 >seq1367 Length=6375 Score = 215 bits (238), Expect = 1e-53 Identities = 234/307 (76%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| ||||||||| || || || |||||||||||||||||| Sbjct 1033 GGCATTGCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCTCACTGCTGCCTCCCGTAG 974 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 973 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 914 Query 121 CGTCGGCTTGGTGGGCTATTA-TCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTC 179 ||| | ||||| ||| ||| | ||||||||| |||||| ||||| ||||| ||||| Sbjct 913 CGTGGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGCCGCAAGCCCCTCTTTT 854 Query 180 AGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 ||| | | | | | | ||||| | | ||| || |||||||| Sbjct 853 GGCG--CGGTTTCCCGCC--------TTTCACTCCTC--AGCTCATGGGGAATTAGCGTC 806 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||| | ||||| || ||| ||||| ||||| || ||||||||| |||||||||| Sbjct 805 GGTTTCCCGATGTTATCCCCCTCCAAAAGGTAGGTT-CTTACGTGTTACGCACCCGTCCG 747 Query 300 CCACTAA 306 ||||||| Sbjct 746 CCACTAA 740 >seq1323 Length=6941 Score = 114 bits (126), Expect = 3e-23 Identities = 97/118 (82%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 56 CGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTA 115 |||||||||||||||| ||||||||||||| |||||| | |||||||||||| || |||| Sbjct 1973 CGTAGGAGTCTGGGCCATGTCTCAGTCCCAGTGTGGCTGATCAACCTCTCAGACCAGCTA 2032 Query 116 CCGATCGTCGGCTTGGTGGGCTATTA-TCTCACCAACTACCTAATCGGCCGCGAGCCC 172 | |||||| | ||||| ||| ||| | ||||||| |||||| ||||| ||||| Sbjct 2033 CTGATCGTGGCCTTGGGAGGCCTTTACCCCCACCAACACGCTAATCAGCCGCAAGCCC 2090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998374710528