Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1367 206 6e-51 seq581 147 5e-33 >seq1367 Length=6375 Score = 206 bits (228), Expect = 6e-51 Identities = 161/191 (84%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 208 CACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAG 267 |||||||||||| | | ||||| ||| || |||| ||||||| | | ||| ||||| Sbjct 4149 CACAGCTTCGGCAGGTTACTTAGTCCCGGC--CATTGTCGGCGCAAGAACGCTTTACCAG 4092 Query 268 TGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTAC 327 ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| | Sbjct 4091 TGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCAAACCTCCTGGTTGTTTCA 4032 Query 328 GCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGC 387 ||| |||||||||| ||||| ||| |||| |||||||||||||||| |||||||||| Sbjct 4031 GCATTCTCACATCCTTTTCCACTTAGTAACCATTTAGGGGCCTTAGCTGGTGATCTGGGC 3972 Query 388 TGTTTCCCTCT 398 ||||||||||| Sbjct 3971 TGTTTCCCTCT 3961 >seq581 Length=36442 Score = 147 bits (162), Expect = 5e-33 Identities = 109/126 (87%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 ||| |||||||||||||||||||||||||||||| |||||||||| |||| ||||||||| Sbjct 35343 CTTCACCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCAAACCTCCTG 35402 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 |||| | ||| |||||||||| ||||| ||| |||| |||||||||||||||| | Sbjct 35403 GTTGCTTCAGCATTCTCACATCCTTT-CCACTTAGTAACCATTTAGGGGCCTTAGCTGGT 35461 Query 379 GATCTG 384 |||||| Sbjct 35462 GATCTG 35467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177570171392