Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1367 248 2e-63 seq1323 116 9e-24 seq1123 86.0 2e-14 seq904 73.4 1e-10 >seq1367 Length=6375 Score = 248 bits (274), Expect = 2e-63 Identities = 304/411 (74%), Gaps = 18/411 (4%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| | || |||||||| | |||||||||| ||| |||||||||| |||||||| Sbjct 1064 TTTACAATCAATAGACCTTCTTCCTCCACGCGGCATTGCTCCATCAGGCTTTCGCCCATT 1005 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1004 GTGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 945 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA-CCCCGCC 183 ||||| |||||||||||||||||||| |||||| |||| || |||| ||| |||| || Sbjct 944 GGCTGATCATCCTCTCAGACCAGCTACTGATCGTGGCCTTGGGAGGCCTTTACCCCCACC 885 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||||||||||| || | | | || | | | || ||| ||| | || Sbjct 884 AACTAGCTAAT--CAGCCG---CAAGCCCCTCTTTTGGCGC-----GGTTTCCCGCCTTT 835 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 || | | ||| || |||||| | |||||| | |||||||||||||| ||| Sbjct 834 CACTCCTCAGCTCATGGGGAATTAGCGTCGGTTTCCCGATGTTATCCCCCTCCAAAAGGT 775 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 || ||| | |||| ||||||||||||||| | ||| | || || Sbjct 774 AGGTTCTTACGTGTTACGCACCCGTCCGCCACT--AAATAATAGCCGTAA-----AGCCA 722 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 721 TTACCCGTACGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 671 >seq1323 Length=6941 Score = 116 bits (128), Expect = 9e-24 Identities = 90/106 (85%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||||||||| || ||||||||| |||||||||||| ||| |||||||||||||||| Sbjct 1973 CGTAGGAGTCTGGGCCATGTCTCAGTCCCAGTGTGGCTGATCAACCTCTCAGACCAGCTA 2032 Query 151 GGGATCGTCGCCTAGGTGGGCCATTA-CCCCGCCAACTAGCTAATC 195 |||||| |||| || |||| ||| |||| ||||| ||||||| Sbjct 2033 CTGATCGTGGCCTTGGGAGGCCTTTACCCCCACCAACACGCTAATC 2078 >seq1123 Length=10053 Score = 86.0 bits (94), Expect = 2e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 || ||| |||||||||| |||||||||||| |||||||||||||||||||| |||||| Sbjct 1420 TCAGGAAGGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGT 1361 Query 159 CGCCTAGGTGGG 170 |||| || ||| Sbjct 1360 GGCCTTGGGGGG 1349 >seq904 Length=16060 Score = 73.4 bits (80), Expect = 1e-10 Identities = 59/70 (84%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 127 CTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCC-ATTACCCCGCCAA 185 ||| |||||||||||||||||||| |||||| |||| || |||| || |||| |||| Sbjct 9830 CTGATCATCCTCTCAGACCAGCTACTGATCGTGGCCTTGGGAGGCCTTTTCCCCCACCAA 9889 Query 186 CTAGCTAATC 195 |||||||||| Sbjct 9890 CTAGCTAATC 9899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222369036608