Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1367 190 7e-46 seq581 75.2 4e-11 >seq1367 Length=6375 Score = 190 bits (210), Expect = 7e-46 Identities = 394/572 (69%), Gaps = 22/572 (4%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| |||||| |||| | | | |||||||| || |||||||| || Sbjct 3618 CGAGTCTGAATAGGGCGTTTAAGTCATTTCCTCTGGACCCGAACCCGGGTGATCTAATCA 3677 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || ||||||||||| | |||||||| |||||||||||||| || ||||||||||| Sbjct 3678 TGACCAGGATGAAGCTTGGGTAACACTAAGTGGAGGTCCGAACCGACCGATGTTGAAAAA 3737 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | | ||||||| |||| |||||| |||| | || | |||| ||| ||||||| ||| Sbjct 3738 TCGGCGGATGAGTTGTGATTAGGGGAGAAATTCCAATCGAACTCGGAGCTAGCTGGATCT 3797 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCA-CCATC-GGGGGTAGAGC-ACTGTT 236 | |||||| || ||| || ||| || | | ||| |||||| ||| |||||| Sbjct 3798 CCCCGAAATGCGTTGAGGCGCAGCGGCAACGATGAGCTATCATGGGGTAAAGCTACTGTT 3857 Query 237 ATGGCTAGGGG--GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC-GCATCAG 293 | | | ||| | | ||| |||||| | | |||||||| |||| | || Sbjct 3858 -TCGATGCGGGCTGCGAAAGCG--GTACCAAGTCGTGGCAAACTCAGAATACATGATACT 3914 Query 294 TTTTACCG--CGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATC 351 ||||||| | |||||| | |||| |||| || | | ||||| || | | Sbjct 3915 GTTTACCGTAAGCCAGTGAGACTGTCGGTGATAAGATCGATAGTCAAGAGGGAAACAGCC 3974 Query 352 CGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCT 411 | || | ||||||||||||| ||||| |||||| || || || || || |||| Sbjct 3975 CAGATCACCAGCTAAGGCCCCTAAATGGTTACTAAGTGGAA--AAGGATGTGAGAATGCT 4032 Query 412 AAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 | ||| | |||| ||| |||| |||||||||| | || ||||||||||||| |||||| Sbjct 4033 GAAACAACCAGGAGGTTTGCTTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCA 4091 Query 472 CTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGG 531 || || || || ||| || ||| |||| | ||||| || ||||||| ||| Sbjct 4092 CTGGTAAAGCGTTCTTGCGCCGACAATGGCCGGG-ACTAAGTAACCTGCCGAAGCTGTGA 4150 Query 532 GA-----TCATTTATATGATCGGTAGGGGAGC 558 || | |||| ||||||||||||||| Sbjct 4151 GATTTCTTTTTTTAAGAGATCGGTAGGGGAGC 4182 >seq581 Length=36442 Score = 75.2 bits (82), Expect = 4e-11 Identities = 88/117 (75%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||||||| ||||| |||||| || | || || || |||| | || | Sbjct 35459 CAGCTAAGGCCCCTAAATGGTTACTAAGTGGAA---AGGATGTGAGAATGCTGAAGCAAC 35403 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 |||| ||| |||| |||||||||| | || ||||||||||||| |||||||| || Sbjct 35402 CAGGAGGTTTGCTTAGAAGCAGCCACCC-TTGAAAGAGTGCGTAATAGCTCACTGGT 35347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689557202432