Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1367 125 1e-26 >seq1367 Length=6375 Score = 125 bits (138), Expect = 1e-26 Identities = 185/256 (72%), Gaps = 12/256 (5%) Strand=Plus/Plus Query 4 GCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGC 63 ||| |||||||| ||| ||| | | || ||||||||| || || | |||| | || Sbjct 2948 GCATATGGTGGAGACCTAGGCACTCAGAGACGATGAAGGGCGCAGATACCGGCGAAACGC 3007 Query 64 TGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCT 123 | || |||| |||| || |||||||||| |||| |||||| ||| |||| | Sbjct 3008 TTCGAGGAGCTGGCAA-CAAGCTTTGATCCGAAGATCCCCGAATAGGGCAACCTG----- 3061 Query 124 TTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCG--AACGCGGCGAACTGAAACA 181 | | || || || |||| |||| || || |||| | ||| | | ||| ||||||| Sbjct 3062 -TAAAAC-TTCCA-GCAGAATTCATATGT-TGGAAAGAGGCAACCCAGTGAATTGAAACA 3117 Query 182 TCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATG 241 ||| |||||||| ||||||||||| ||| || ||||||| ||||| |||||||||| | Sbjct 3118 TCTTAGTAGCTGGAGGAAAAGAAAGCAAACGCGATTCCCGTAGTAGCGGCGAGCGAACCG 3177 Query 242 GGATGAGCCTTTACGA 257 || | ||||| |||| Sbjct 3178 GGGTTAGCCTAAACGA 3193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918376736928