Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1904 688 0.0 seq646 91.5 5e-16 >seq1904 Length=2618 Score = 688 bits (762), Expect = 0.0 Identities = 478/536 (89%), Gaps = 10/536 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1412 CTTTTGTTCTACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 1471 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 1472 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGATC 1531 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGT-TCCGCTTCATT 184 || | ||||| | ||| || |||| | || | | || || | ||| | || Sbjct 1532 AGCAC-CGAAGTGCTTTAGAGCTAGAAGCAGGGACAG---AGTCCCGCCTCCAACTAATG 1587 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| |||| ||| ||||||||||||||| ||||||| ||||||||| Sbjct 1588 GAATAAGTAAAACAACGTTAAAAGTAGTGGTATTTCACCGTCGCCGAA---GCTCCCACT 1644 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1645 TATTCTACACCTCTTAAGTTATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 1704 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1705 TCTTTCCCCGCTGTTTATTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 1764 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1765 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 1824 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1825 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 1884 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTT 540 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1885 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACATC-CTTT 1939 >seq646 Length=30090 Score = 91.5 bits (100), Expect = 5e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 266 TTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT 320 ||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 15176 TTTCACAAAGTCGGACTAGAGTCAAGCTCAACAAGGTCTTCTTTCCCCGCTGTTT 15122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635158580384