Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1367 226 1e-56 >seq1367 Length=6375 Score = 226 bits (250), Expect = 1e-56 Identities = 348/485 (72%), Gaps = 10/485 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| ||||||||| ||||||| || Sbjct 5332 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTACACTCAAGGCCTGATTTCC 5273 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||||||||||||||| ||| | ||||||||||| ||| ||| |||| ||||||||| Sbjct 5272 GTCCAGGCTGAGGGAACCGTTGCACACCTCCGTTACACTTTAGGA-GGCATCCGCCCCAG 5214 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGA-TCATGGGCCAAGGTTAGATATCCA 179 |||||| |||||| | | |||| | || ||| | || |||| || | Sbjct 5213 ATAAACTGCCCACCTGAAAATGTCAAGTGTCTTGATTCAAAGATCACCATTAGGATTCTA 5154 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 | ||||||||| | |||| ||| ||| | | | | | |||||| Sbjct 5153 GCTCTTCCAGAGTGGTCTCTCAATGACGGCTCATGTTCTCCCGGAAGAGAACCTTCATAG 5094 Query 240 TCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAAG-G 296 |||||||||| || | || || || ||||| ||||| ||| | || ||| ||| Sbjct 5093 CCTCCCACCTAGGCTGCGCAAGAAAAGC-CCGAA-CCCAATTCCAGGATACAGTCAAGCT 5036 Query 297 TCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCG-TACTGCAATTTC 355 || |||||||| |||| | || | | ||||||| || | | | ||||| Sbjct 5035 TCATAGGGTCTTTCTGTCCAGGTGCAAGTAGTCCGCATCTTCACGGGACAAGTCTATTTC 4976 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACT 414 |||| |||| | |||||||| | || |||||||||| ||||||||||||| |||| Sbjct 4975 ACCGAGCCTCTCTCCGAGACAGC-GCCCAGATCGTTACGCCTTTCGTGCAGGTCGAAACT 4917 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 ||| |||||| ||||||||||||||||||| ||||||||||| |||||||| || ||| Sbjct 4916 TACTCGACAATGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGG 4857 Query 475 GCTTC 479 ||||| Sbjct 4856 GCTTC 4852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702356878208