Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1367 176 1e-41 >seq1367 Length=6375 Score = 176 bits (194), Expect = 1e-41 Identities = 207/280 (74%), Gaps = 19/280 (7%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||||||| | |||||| || Sbjct 1135 GGCTGCTGGCACGAAGTTAGCCGGAGCTTATTCCTCAGGTACCGTCA------------- 1089 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 ||| || |||||| | ||||| ||||||||||| |||| ||||| |||| ||||| Sbjct 1088 -GAAC---TTCTTCCCTGAGAAAAGGAGTTTACAATCAATAGA-CCTTCTTCCTCCACGC 1034 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || |||||||||||||||||||||||| Sbjct 1033 GGCATTGCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCTCACTGCTGCCTCCCGTAG 974 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 973 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 914 Query 241 CGTAGGCTAGGTGGGCCGTTA-CCCCGCCTACTACCTAAT 279 ||| | || || |||| ||| |||| || |||| ||||| Sbjct 913 CGTGGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAAT 874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068772927296