Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7 131 1e-25 >seq7 Length=421595 Score = 131 bits (144), Expect = 1e-25 Identities = 156/210 (74%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATCAGGTA 66356 || || | ||| ||||| || | | |||||| ||||| ||| || || ||| | Sbjct 312947 GGGCAGAACAGGGACCAGTCCTCGT--TGTTCTCCACACGCTCCATGAACAGGTCATTGA 312890 Query 66357 TCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA 66416 |||| ||| |||| ||||| || || || ||| |||||| ||||||| || ||||| | Sbjct 312889 TCCACAGGCCGTAAAAGAGGTCACGCGCGCGTGCCTCCTCCTTGCCGTGGTTCTTGCGTA 312830 Query 66417 AGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCA 66476 ||| ||||||||||| | ||| || ||||| || |||| |||||| || || | |||| Sbjct 312829 GGTCTAGGAACTCAAACACGTCTGCGTGCCAGGGCTCCATGTAGATAGCAAAGGCGCCCT 312770 Query 66477 TACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 | || ||||| ||||| ||||| ||||||| Sbjct 312769 TGCGCTTGCCACCACCCTGGTCCACGTAGC 312740 Score = 116 bits (128), Expect = 3e-21 Identities = 531/821 (65%), Gaps = 37/821 (5%) Strand=Plus/Minus Query 65120 AGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAAT 65179 || ||||||||||||||||||||||| ||| || || || || | || | | | Sbjct 314601 AGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGTAGGGACG-TGAG 314543 Query 65180 TTTGCATAA-TTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG 65238 |||| || || || || | || || || |||||||| ||||| |||||| | Sbjct 314542 CTTGCCGAAGTTGGGGTCCGGCATGAACACGTTGAACGACTGGCTCTGGTCGATGAAGGC 314483 Query 65239 ACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTA 65298 |||||||| || |||||||| | | ||| | |||||||| || |||||||| Sbjct 314482 CCCACGATCCGCGGCCATGTCCACCAGCACACGCTGCTTGATCTCCCACACCGTCTTGTA 314423 Query 65299 CAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAAT 65358 |||| || | |||| || || ||| | |||||||||| || || | Sbjct 314422 CAGGGAGCGCAGCTCATCAGGGATGTCCAGAG---CCTGGACTGACCCGTTGGCCGCCAC 314366 Query 65359 AATGCGATTACGCATCGA-CTCTGA---CCACAAACCCAAATCGATA-AGATGTTGAACC 65413 | || | | | || ||| | ||||| |||| || || || | || | | Sbjct 314365 CA-GCTCGTTC---TTGATCTCAGGGTTCCACAGGCCCATG-CGGTACAGGTCGTGCAGC 314311 Query 65414 AAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGAC 65473 | ||| | || | ||| ||||||||| ||||| || || || || ||||||||||| Sbjct 314310 AGGTGCTGGTTCACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATGTTGGAG 314251 Query 65474 GTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATG 65533 ||| ||| |||||| | || |||| || ||||| |||| || ||||| || |||||| Sbjct 314250 GTGTAGGGCTCAAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCGGTGGGCATG 314191 Query 65534 GGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGT-TGTGACGCAATTCGTC 65592 || || | || || ||||| |||| ||||| |||||| || | |||| | | Sbjct 314190 GGCGCCAGCAGCAGCGAGTTGCGCACGCCGTTGGCGGCAATGTCTGCG-CGCAGGCCAGC 314132 Query 65593 CCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAG--GGTT 65650 ||||| | || ||| || | | | || | |||||| || || ||||| | Sbjct 314131 CCAGT--CCCAGCGG----TCCGAGCCCTTCATGCCCCACATGTCATGCTGCAGCACGCC 314078 Query 65651 CCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA 65710 | || || | || || || || | | || || ||||||| |||||| || | Sbjct 314077 CTGAGAC--ACAGGGGAGCCAGGGTATGTCTCATAGGGGCCCTCCTTCTTGGCCAGCTCC 314020 Query 65711 CAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATG-CGTCGATTAAGTTCACG 65769 | |||| || || || | || ||| ||| || ||| | | | || || | | Sbjct 314019 ATGGACGTCTTCAGGGCCGCGTAGTAGATGCACTCAAAGATGTCCTTG-TTCAGCTGCTG 313961 Query 65770 TGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAAC 65829 |||||| || | ||||| |||| ||| | || | ||| ||||| || || || Sbjct 313960 CGCCTCAGGCGAGTCAAAGGGCATGCCCAGCAGCAGGAACGCGTCAGCCAGGCCCTGGAC 313901 Query 65830 TCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGT----ACAGGGT 65885 || ||||| ||||| || || |||| ||||| || |||| | ||| ||||||| Sbjct 313900 CCCGATACCAATGGGGCGGTGGCGCAGGTTGGAGCG-CTCGGC---GGTCTTCACAGGGT 313845 Query 65886 AGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACC 65926 | || |||| ||||| || |||| ||||| |||||| Sbjct 313844 AATAGTTGACGTCGATGATCTTGTTCAGGTTGCGGGTCACC 313804 Score = 91.5 bits (100), Expect = 1e-13 Identities = 262/401 (65%), Gaps = 8/401 (2%) Strand=Plus/Minus Query 66518 TTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGG 66577 |||||||| |||| ||| || || | ||||| || | || ||||||||| |||| Sbjct 312490 TTGAAGACGCGCAGCATGGGCACAACACCGTTGGAGGTACCGTTGGTGCCGCGGATGTAC 312431 Query 66578 GATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATG 66637 || || || ||||| | ||| | || || || || ||||||| ||| ||||| Sbjct 312430 GAGCCGGTGGCACGTATGTTGTGGATGGAGAGGCCGATGCCGCCGGCCGACTTGGAGATC 312371 Query 66638 GCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGG 66697 ||||||| || | || | |||||||| ||||| || |||| || Sbjct 312370 ACAGCACACTCCTTGAGCGTGTCATAGATGCCGTCGATGGAATCGTTCTTGGCACACACC 312311 Query 66698 AGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCG 66757 ||| |||| || || ||||| ||| ||| ||| |||||||||||| | ||| Sbjct 312310 AGGAAGCAGGAGGACAGCTGGGGGCGGGGGGTGCCGGAGTTGAAGAGGGTGGGGGAGGCG 312251 Query 66758 TGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCG 66817 ||||| || | | ||||||| | |||||| | |||| | ||||| |||| || Sbjct 312250 TGCGTGAACCAGCGCTCAGACATGAGGTGGTACGTGTTGATGGCGGCATCGATGTCATCC 312191 Query 66818 CCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTC---GACC-AGCCG 66873 || || || | || |||||||| | || || || || || |||| |||| Sbjct 312190 TTGTGGATGCCCACGGCCACGCGCATCAGCATGTGCTGGGGGCGCTCAATGACCTTGCCG 312131 Query 66874 ATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGA 66914 ||||| ||| | ||||||||| ||||| |||| || Sbjct 312130 ----TTGATGCGCAGGAGGTAGGAGCGCTCCAGCGTCTGGA 312094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555726703120