Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq176 96.9 1e-14 seq115 96.9 1e-14 seq826 86.0 3e-11 >seq176 Length=120854 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 349073 GCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCG 349132 |||| || |||||||||| | |||| ||||| ||||||||| || ||| ||||| Sbjct 26405 GCGTTGATGATCTCCTTGATGCGAGGCACACCCAGCGTCACGTTCATGCTCGCCACGCCC 26464 Query 349133 GCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTG 349185 ||||||||||| |||| ||| |||| ||||||| ||||||||| || |||| Sbjct 26465 GCAAAGTGGAACGTCTTGAGCGTCATCTGCGTGCCGGGCTCGCCAATCGACTG 26517 >seq115 Length=153645 Score = 96.9 bits (106), Expect = 1e-14 Identities = 137/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 351081 CCTGCACGGCGTGGCCGTTGGTCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGA 351140 ||||| | |||| ||| ||||||| || ||||||||||||||||||||| ||||| Sbjct 91416 CCTGCGCCACGTGCATGTTCATCTCGTCGCCATCAAAGTCGGCGTTGTAGGGCGTGGTGA 91357 Query 351141 CCGACGGGTTGATGCCGATGGTGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGA 351200 |||| | |||| || || |||| || | || || |||| ||||||||| |||| | Sbjct 91356 CCGAGAGATTGAGGCGGAAGGTGGAGTACGGCAGGATGCG---CACGCGGTGGCCCATCA 91300 Query 351201 TGGACCCGTTGTGGAGCGTGGGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGT 351260 | | ||||| |||| ||||| || ||| || | || ||| |||| | | || Sbjct 91299 TACTCATCTTGTGCAGCGACGGCTGCCGGTTGAAGAGCACGAGGTCACCATTGATGAGGT 91240 Query 351261 GCCTCTCCACCT 351272 | | |||||||| Sbjct 91239 GGCGCTCCACCT 91228 >seq826 Length=19700 Score = 86.0 bits (94), Expect = 3e-11 Identities = 143/204 (70%), Gaps = 11/204 (5%) Strand=Plus/Minus Query 122103 CCGCCCTGGGCATCGCCTACCTCCACAGCCTGCGACCGGCCATCGTGCACCGCGACATCA 122162 |||| |||||||| |||||| ||| || | || ||| || | ||| ||| ||| Sbjct 11505 CCGCGCTGGGCATGAGCTACCTGCACGACCAGTCCCCCGCCGTCATCCACTTTGACCTCA 11446 Query 122163 AGCCCTCTAACCTGCTGGTGGACGTCAACGCCGAGGGCCAGCGCACCATCAAGGTGGCCG 122222 ||||| |||||||||||||||| ||| ||||| ||| || ||||||||||||| Sbjct 11445 AGCCCGACAACCTGCTGGTGGACGGGGACGGCGAGG---AGCTGACGATCAAGGTGGCCG 11389 Query 122223 ACTTTGGCTTTGCCCACATCAAGGAGGAGAAC---GTCA----CCATGACCCGCGCCGGC 122275 ||||||| | || | |||| | ||| |||| |||||||| ||| |||| Sbjct 11388 ACTTTGGGCTGTCCAAGCACAAGTTCAACAACTATGTCACATGCCATGACCTGCG-CGGC 11330 Query 122276 ACGCCGTGCTGGATGGCGCCCGAG 122299 |||| | | |||||||| ||| Sbjct 11329 ACGCTGCCGTACATGGCGCCAGAG 11306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084669891542334