Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1134 535 5e-147 seq1186 343 2e-89 seq681 113 5e-20 >seq1134 Length=9887 Score = 535 bits (592), Expect = 5e-147 Identities = 733/1021 (72%), Gaps = 10/1021 (1%) Strand=Plus/Minus Query 161512 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCT 161571 |||||||||| | || |||||| | | ||| |||||||| || || || ||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 161572 GGACTTCTTCTTTTTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGAC 161630 || || || || |||||| |||||| |||| | || |||||| | ||||| || || Sbjct 7876 GGT-TTATTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 161631 TTTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAATTT 161690 || | ||| ||||| || ||||| | || | ||| || | || ||| || || Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 161691 TCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTG 161750 | ||||| || ||| ||||| ||| || |||||| || || |||||| || | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 161751 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTT 161810 ||||||||| || ||||| ||||| | ||| ||||||| || || | ||| ||| Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 161811 TGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGC 161870 || || | ||||| || || | | | || || |||||| | ||||| |||||| |||| Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 161871 TCGTCTTATCGGTA----TCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTG 161926 ||| || ||| | ||||||||||| || || |||||||| | || ||| ||| Sbjct 7577 GCGT----TCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTG 7522 Query 161927 TTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCAT 161986 | || || || || | || || ||| | || || || ||||||||||| ||| Sbjct 7521 TATTCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAA 7462 Query 161987 CGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGA 162046 ||||| ||||| || || ||| | || | || ||| | || ||||||||||| |||| Sbjct 7461 GTTTTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGA 7402 Query 162047 CGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTG 162106 | ||||| || ||||||||||||||||| || ||| | || |||| |||||| | | || Sbjct 7401 CTCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 7342 Query 162107 CTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTT 162166 | |||||||||| ||||| |||||||| | | | |||||||||| || || |||| Sbjct 7341 CAATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTT 7282 Query 162167 TCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTT 162226 || ||||| || | || |||| || || |||||||| ||||| ||||| ||| | | Sbjct 7281 TCCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGAT 7222 Query 162227 TCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGC 162286 ||||||||||||| |||||| | |||||| ||| || || ||||| || ||||| |||| Sbjct 7221 TCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGC 7162 Query 162287 TCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTA 162346 | ||||| || || | ||||| |||| ||| | || || | ||||| | ||| | | Sbjct 7161 TATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAA 7102 Query 162347 ATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTG 162406 | || | || || || ||||| |||||||| || || || || || |||||||| |||| Sbjct 7101 ACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTG 7042 Query 162407 AAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAG 162466 |||| ||||| || || |||||| | || ||||||||| ||||||| ||| |||| | Sbjct 7041 AAACATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTC 6982 Query 162467 TTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCAC 162526 || ||||| || || || ||||||||||| ||||| | ||| | |||||||| | Sbjct 6981 AAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTC 6922 Query 162527 T 162527 | Sbjct 6921 T 6921 >seq1186 Length=9024 Score = 343 bits (380), Expect = 2e-89 Identities = 358/470 (76%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 160325 AATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTG 160384 |||||| | ||||| || ||||||||| | ||||||||||| ||||| ||||| || | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 160385 TTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACT 160444 ||||| |||||||| || || | || |||||| | | || | || || || |||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 160445 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCA 160504 || || ||| ||||||||||||||||||||| ||||| |||||||||||||| || Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 160505 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCT 160564 ||||| || ||||| |||||||| ||||||||||| || || || |||||||| || || Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 160565 CTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTT 160624 | ||||||||| | ||||||||||| ||||| | || ||||| || || | ||| | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 160625 TCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAA 160684 || || ||||| ||||| | || || ||||||||||||||||| | | ||| ||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 160685 GGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTC 160744 || | || | ||||||||||| ||| | | ||||| ||| | || ||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 160745 ATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 160794 ||||| || ||||||||||||||||||||||| ||| | ||| ||| ||| Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 295 bits (326), Expect = 7e-75 Identities = 287/367 (78%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||||||||| | |||||||| | ||||| | || ||||||||||||| || | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| ||||| || |||| ||| |||| |||||| |||| |||||||||||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 ||||| ||||||||||| |||||||| || || |||||||| | | ||||||||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 ||||||| ||||||| ||| | || | || ||||| || ||| | |||||||| || || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 ||||||||| || || || ||||||||| | || ||||||||||||| |||| | | || Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | ||||||| | | || |||| || ||||| |||||||||||| | |||| ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Query 160162 TCTCGGT 160168 | | ||| Sbjct 8463 TTTAGGT 8457 Score = 125 bits (138), Expect = 8e-24 Identities = 95/112 (85%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 160169 ATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTC 160228 |||||||| |||||| |||||| |||||||||||||| |||||||| ||||||||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 160229 CTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160280 || ||||||| ||||||| ||||||||||| || | ||||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 113 bits (124), Expect = 5e-20 Identities = 126/168 (75%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 160341 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATG 160400 ||||||||||| | ||||||||||| || |||||||| || | |||||||| |||| | Sbjct 3255 CGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACG 3196 Query 160401 GATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATG 160460 | || | || |||||| | | || | || || || || | || || ||| || Sbjct 3195 GTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCTG 3136 Query 160461 GTTACAAGTTCGGTCAAGAGGA----AGAGACTTACAACATCGTCGCA 160504 |||||||||||||||||||||| ||| |||||||||||||| ||| Sbjct 3135 GTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551358542057400