Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq1134 527 8e-145 seq1186 374 1e-98 seq681 123 3e-23 >seq1134 Length=9887 Score = 527 bits (584), Expect = 8e-145 Identities = 726/1012 (72%), Gaps = 10/1012 (1%) Strand=Plus/Minus Query 189999 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTT 190058 ||||||||| | | ||| || || || || || |||||||| || ||| || || || Sbjct 7921 GATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTA-TTATTATT 7863 Query 190059 CCCAC-TGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTG 190117 |||| |||||| | ||| | ||||| ||| | ||||| || || |||| ||| || Sbjct 7862 CCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAACATTTGTTACTTCATG 7803 Query 190118 GTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTTACAGCGGCTGT 190177 |||||| || || | |||| | |||| | || ||| ||| || | ||||| ||||| Sbjct 7802 GTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGT 7743 Query 190178 GTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCA 190237 ||||| |||||| | |||||| || || |||||| | | |||||||||||| | || Sbjct 7742 TTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATGGGGTCCTGAAGCGCA 7683 Query 190238 AGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 190297 ||| ||||| | ||| ||||||| || || | ||| |||| || || | ||||| Sbjct 7682 AGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTTCGTAGCTTTACACGG 7623 Query 190298 GGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA- 190356 || || | | |||| || |||||| | ||||| |||||| | || ||| || ||| Sbjct 7622 TGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGCGCGT----TCTGTAA 7567 Query 190357 ---TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCT 190413 | ||||||||||| || || || ||||| | || || |||| || || || | Sbjct 7566 ACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATTCGTATCTGTAT 7507 Query 190414 TTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAG 190473 | | || |||||| | |||||||| ||||||||||||| ||| || ||||| |||| Sbjct 7506 TCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTTTGGTGTTGCAG 7447 Query 190474 CGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCC 190533 | |||||||| || | || ||||| ||||| ||||| |||||||| || ||||| |||| Sbjct 7446 CAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCTTAACCCATTCC 7387 Query 190534 ACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGA 190593 |||||||||||||||| ||| | | || | || || | | ||||| || |||| | Sbjct 7386 ACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAATTCACGGTGCAA 7327 Query 190594 CTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACT 190653 ||||||| || || || | ||||||||||| || ||||| || || ||| || Sbjct 7326 CTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTCCGTGCTTTCAACC 7267 Query 190654 CTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCT 190713 | ||||||| ||||| || || || ||||| ||||| ||| | |||||||| || || | Sbjct 7266 CAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTCTGGTCACAGATTT 7207 Query 190714 TTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTA 190773 | ||||| || || ||| || | ||||| || ||||| ||||| || || || |||| Sbjct 7206 TCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTATTCGTACCAGTTA 7147 Query 190774 TGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 190833 ||||| |||| | | || || | ||||| | ||| | ||||| | || |||| Sbjct 7146 CTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAACCTAAGAGCCTATG 7087 Query 190834 ACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAA 190893 | ||||| || || || ||| |||| || |||||||| ||||| || || || || |||| Sbjct 7086 ATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAAACATTCTATACAA 7027 Query 190894 AAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATG 190953 ||||||| | || ||||||||| ||||| | ||| |||| || || ||||| || | Sbjct 7026 AAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAAGACCAACCACACG 6967 Query 190954 AGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGATA 191005 | ||| ||||| || ||||||||||| || | || |||||||| | ||| Sbjct 6966 AACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTTTAATA 6915 >seq1186 Length=9024 Score = 374 bits (414), Expect = 1e-98 Identities = 356/455 (78%), Gaps = 0/455 (0%) Strand=Plus/Minus Query 189373 AACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTG 189432 || ||| | |||||||| ||||||||| | || || || ||||| || ||||||||| | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 189433 TTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACC 189492 ||||| || ||||| |||||| | || || ||||| | | |||||||| ||||||| | Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 189493 GAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCT 189552 || || ||| |||||||||||| || |||||||||||||| ||||||||||| ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 189553 GCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCA 189612 || || || || || |||||| | ||||||||||| || || ||||||||||| |||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 189613 CTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTC 189672 | ||||||||| | ||||| |||||||| || |||| |||||||| || | || | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 189673 AGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAA 189732 || ||||| |||||| | || |||||||||||||| || || || | || |||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 189733 GGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTC 189792 |||||||| | ||||| ||||| ||| | ||||||||||| | |||||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 189793 ATGCATGAGCGTAACGCTCACAACTTCCCTCTTGA 189827 |||||||| ||||||||||||||||||||||| || Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGA 5453 Score = 298 bits (330), Expect = 7e-76 Identities = 325/425 (76%), Gaps = 6/425 (1%) Strand=Plus/Minus Query 188797 ACTATTAAC-ATGACTGCAACTCTCTCACGTCAGCAGAGTGGCA--CTTGGGAATCATT- 188852 ||||||||| ||||| |||| ||| ||||| | ||| | ||| || || || Sbjct 8880 ACTATTAACTATGACAGCAATTCTTGAACGTCGTGAAAGTTCTAGCCTTTGGGCTCGTTT 8821 Query 188853 CTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGAT 188912 |||||| ||| |||| |||||| | |||||| | || |||||||||||||||| | || Sbjct 8820 CTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATCAT 8761 Query 188913 GATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCC 188971 ||||||||| ||| | | || || |||| |||||| |||| || ||||||| || | Sbjct 8760 GATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCCTC 8702 Query 188972 CTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACA 189031 |||| ||||| ||||| ||||| || || || |||||||| | | || || ||||||| Sbjct 8701 CTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAACA 8642 Query 189032 TCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCT 189091 ||||| ||||||||||| ||||| |||| ||||| || ||| | ||||||||||| || | Sbjct 8641 TCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATTT 8582 Query 189092 GGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCT 189151 ||||||| || || || || |||||| | |||||||||||||||| |||| | | || | Sbjct 8581 GGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTT 8522 Query 189152 TCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACCGTC 189211 ||||||| || | || |||| | |||||||| |||||||||||| | |||| |||| Sbjct 8521 GCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCGTT 8462 Query 189212 TCGGT 189216 | ||| Sbjct 8461 TAGGT 8457 Score = 89.7 bits (98), Expect = 7e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 189217 ATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTT 189276 |||||||| |||||| ||||||||||||| || || || || ||| | || || || Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 189277 CTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 189328 | |||| ||| | |||||||||||||||||||||| ||||| || |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 123 bits (136), Expect = 3e-23 Identities = 133/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 189380 TGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCG 189439 || ||| | | ||||||||| | || || || ||||| |||||||||||| | ||||| | Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 189440 CAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCC 189499 || |||| |||||| | || || ||||| | | |||||||| ||||| | ||| || Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAG 3145 Query 189500 AGAACTATGGTTACAAGTTTGGACAAGAAGA----AGAAACGTACAACATCGTTGC 189551 ||| |||||||||||| || ||||| || |||||| ||||||||||| || Sbjct 3144 CTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634059923442000