Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq1134 578 4e-160 seq1186 401 7e-107 seq681 145 9e-30 >seq1134 Length=9887 Score = 578 bits (640), Expect = 4e-160 Identities = 762/1050 (73%), Gaps = 5/1050 (0%) Strand=Plus/Minus Query 163884 TGGTTCGATGTCCTGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 163943 |||||||||| | || |||||| | | ||| || || || || || |||||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 163944 GGATTACTTCTTTTTCCCAC-TGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAAC 164002 || ||| || || |||||| |||||| ||||| | ||||| ||| | ||||||||||| Sbjct 7876 GGTTTA-TTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 164003 GTTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGTTACCTTGAGGGTGCTAATTT 164062 |||||||| |||||||| || ||| | || || |||| | || ||| ||| || Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 164063 CCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 164122 | | ||||| ||||| ||||| |||||| | |||||| || || |||||| | | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 164123 GGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTT 164182 ||||||||| | || || || || | | |||| |||||| || || | ||| |||| Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 164183 TGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGC 164242 || || || ||||| | || | | | |||||||||||| | || || ||||||||||| Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 164243 ACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTT 164302 ||| |||| | ||||| ||||| || || || ||||| | || ||| |||| || Sbjct 7577 GCGTTCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATT 7518 Query 164303 TGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTT 164362 || || ||| | || |||||| | || ||||| |||||||||| || || || Sbjct 7517 CGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTT 7458 Query 164363 TGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACT 164422 ||| || || || |||||| | || | | ||| |||| |||||||| |||||||| || Sbjct 7457 TGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCT 7398 Query 164423 CAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTAT 164482 ||||| ||||| |||||||||||||| || | | |||| |||| | | ||||| || Sbjct 7397 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAAT 7338 Query 164483 TCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAA 164542 ||| ||||| || ||||| || || || || ||||||||||| | || |||||| Sbjct 7337 TCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTCCG 7278 Query 164543 GGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTG 164602 || ||| | || || |||| ||||| |||||||| ||||| ||||| ||| | ||||| Sbjct 7277 TGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTCTG 7218 Query 164603 GTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTT 164662 ||| |||||||| ||| | ||||| || || || ||||| |||||||| ||||| || Sbjct 7217 GTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTATT 7158 Query 164663 TGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCT 164722 || || || | || ||||||| ||| | ||||| | || || | || | || || Sbjct 7157 CGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAACCT 7098 Query 164723 TCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGAC 164782 | || ||||||||||| |||||||| || |||| || || |||||||| ||||| || Sbjct 7097 AAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAAAC 7038 Query 164783 GTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 164842 |||||||| || || ||| | | |||||||| | ||||| ||||||||| | ||| Sbjct 7037 ATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAAGA 6978 Query 164843 CCAGCCACACGAATCGTTT-GTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCT 164901 ||| ||||||||| ||||| ||||| || || ||||| | || | |||||||| || | Sbjct 6977 CCAACCACACGAA-CGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTTT 6919 Query 164902 AAACTTTTAATAAGGATTTCTCTTATTAAA 164931 || | || ||| || | | |||||||| Sbjct 6918 AATACTATACTAATTATCT-TTTTATTAAA 6890 >seq1186 Length=9024 Score = 401 bits (444), Expect = 7e-107 Identities = 371/470 (79%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 161094 AACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTG 161153 || ||| | |||||||| ||||||||||| |||||||||||||| || |||||||| | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 161154 TTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAAC 161213 ||||| || ||||| |||||| | || |||||||| | | |||||||| ||||| ||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 161214 GAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCT 161273 || || ||| |||||||||||| |||||||||||||| || ||||||||||| ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 161274 GCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCG 161333 || || |||||||| ||||| | ||||||||||||||||| ||||||||||| ||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 161334 TTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTC 161393 || ||||||||| | || || ||||| ||||| |||| ||||| || || | ||| | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 161394 TCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAG 161453 || || ||||| |||||| | ||||| ||||||||||||||||| | | || ||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 161454 GGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTA 161513 || || | ||||| ||||||||| | | || ||||||||| | |||||||| ||| Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 161514 ATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 ||||| || ||||| ||||||||||||||||| || | ||| ||| ||| Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 286 bits (316), Expect = 4e-72 Identities = 281/360 (78%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||||||||| | |||||||| | || ||| | ||| |||||||||||||||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTT-ATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| ||||| || |||| || |||| || || | || ||| | |||||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || |||||||| ||||||||||| || ||| |||||||| | | || || ||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 ||||||| ||||||| ||| | ||| | || ||||| || ||| | ||||||||||| || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 ||||||||| || |||||||| || ||| | ||||| ||||||||||||||| | |||| Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 160871 ATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCG 160930 | |||||| | | || |||| ||| |||||||| || ||||||||| | || | ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Score = 107 bits (118), Expect = 2e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 160938 ATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTC 160997 ||||| || |||||| ||||| || ||||| || || |||||||| | ||| |||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 160998 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTA 161049 || |||| ||| |||||||||||||||||||||| |||||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 145 bits (160), Expect = 9e-30 Identities = 138/176 (78%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 161101 TGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCG 161160 || ||| | | ||||||||||| |||||||||||||| ||||||||||| | ||||| | Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 161161 CAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCC 161220 || |||| |||||| | || |||||||| | | |||||||| ||||| ||||| || Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAG 3145 Query 161221 AGAACTATGGTTACAAGTTTGGTCAAGAAGA----AGAGACCTACAACATCGTCGC 161272 ||| |||||||||||| |||||||| || ||| || ||||||||||| || Sbjct 3144 CTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559310290277200