Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq2624 107 4e-21 >seq2624 Length=3676 Score = 107 bits (118), Expect = 4e-21 Identities = 221/324 (68%), Gaps = 11/324 (3%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| || | || | ||||| || | || || | Sbjct 3525 GGGGAGTGAAATAGAACATGAAACCATGTGCTTGCAAGCAGTGGAAGGGTTAAGAGCC-- 3468 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| ||| | | | || |||||||| Sbjct 3467 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTA-TAGGAAGTGGCTGGGTTAAGGA 3409 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC- 190 |||| || ||||| ||| ||||||||| || || |||||| | |||| | Sbjct 3408 ATTCAATCCG--TAGCCCAAGCGAAAGCGAGTCTGAATAGGGCGTAAA--TGGTCACTTC 3353 Query 191 ---TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247 | ||| |||| || |||||||| || || |||||||||| ||||| | Sbjct 3352 TTATGGACCCGAACCCGGGTGATCTATTCATGACCAGGTTGAAGCTTTTGTAACACTAAG 3293 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 ||||||||||||||| | |||||||| | ||||||| | | | |||||| |||| Sbjct 3292 TGGAGGACCGAACCGACCGATGTTGAAAAATCGGCGGATGAGTTGTGAATAGGGGAGAAA 3233 Query 308 GGCCAATCAAACTGGGAAATAGCT 331 |||||| |||| ||| ||||| Sbjct 3232 TTCCAATCGAACTCGGAGCTAGCT 3209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972760095744