Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2680 286 5e-75 seq146 84.2 3e-14 >seq2680 Length=3449 Score = 286 bits (316), Expect = 5e-75 Identities = 220/256 (86%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||||||||||||| ||| | Sbjct 2197 GTACAAAGGGCAGGGACGTAATCAACGCGTGCT-GATGACACGCGCTTACTAGGCATT-C 2254 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||| || ||||||||| ||||||||||||||||| | ||| ||||||| Sbjct 2255 CTCGTTGAAGACTAATAATTGCAATAATCTATCCCCATCACGACGCGGTTTACAAGATTA 2314 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||| |||||||||| | || |||||||| | |||||||||||||||||||| Sbjct 2315 CCCGGGCCTCTCGGCCAAGG--ACAGGCTCGTTGATCGCGTCAGTGTAGCGCGCGTGCGG 2372 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||| |||||| |||||| | | ||||| | Sbjct 2373 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCATACTTCCATTGGCTAAACG 2432 Query 241 GCCAT-CTCCCTCGAA 255 | || |||||| || Sbjct 2433 CCAATAGTCCCTCTAA 2448 >seq146 Length=190748 Score = 84.2 bits (92), Expect = 3e-14 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||| |||||| |||||| | | ||||| | Sbjct 64751 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCATACTTCCATTGGCTAAACG 64810 Query 241 GCCAT-CTCCCTCGAA 255 | || |||||| || Sbjct 64811 CCAATAGTCCCTCTAA 64826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751970116930