Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2680 217 3e-54 >seq2680 Length=3449 Score = 217 bits (240), Expect = 3e-54 Identities = 219/277 (79%), Gaps = 7/277 (3%) Strand=Plus/Minus Query 44 CTTCACTGGGTGTGCCGGGGAGCC-AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAA 102 |||||||| || | | |||| | | || | ||||||||| ||| ||||||||||||| Sbjct 3112 CTTCACTGTCTGGGACTCGGAGTCGACGA-TGTTACTTTGAGTAAAATAGAGTGTTCAAA 3054 Query 103 GCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATT 161 |||||||| |||| ||||| |||||||||||||| ||||||| | | |||| Sbjct 3053 GCAGGCCTACGCTCTGAATAATTTAGCATGGAATAACGCGATAGGACT--CTGGCCTATC 2996 Query 162 TTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCA 221 |||||| | | |||||| ||||||||||| ||| | ||||||||| | ||||| Sbjct 2995 C-GTTGGTCTGTGGGACCGGAGTAATGATTAAGAGGAACAGTCGGGGGCATTCGTATTGC 2937 Query 222 ATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCA 281 ||||||||||||||||||||||||||| ||||| |||| |||||||||| || ||| Sbjct 2936 GTTGTCAGAGGTGAAATTCTTGGATTTACGCAAGACGAACTTCTGCGAAAGCATTTGCCA 2877 Query 282 AGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||||||||| ||||||||||| |||| Sbjct 2876 AGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 2841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915162458496