Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016-
04-26] 4,102 sequences; 141,916,335 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 217 3e-54
>seq2680
Length=3449
Score = 217 bits (240), Expect = 3e-54
Identities = 219/277 (79%), Gaps = 7/277 (3%)
Strand=Plus/Minus
Query 44 CTTCACTGGGTGTGCCGGGGAGCC-AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAA 102
|||||||| || | | |||| | | || | ||||||||| ||| |||||||||||||
Sbjct 3112 CTTCACTGTCTGGGACTCGGAGTCGACGA-TGTTACTTTGAGTAAAATAGAGTGTTCAAA 3054
Query 103 GCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATT 161
|||||||| |||| ||||| |||||||||||||| ||||||| | | ||||
Sbjct 3053 GCAGGCCTACGCTCTGAATAATTTAGCATGGAATAACGCGATAGGACT--CTGGCCTATC 2996
Query 162 TTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCA 221
|||||| | | |||||| ||||||||||| ||| | ||||||||| | |||||
Sbjct 2995 C-GTTGGTCTGTGGGACCGGAGTAATGATTAAGAGGAACAGTCGGGGGCATTCGTATTGC 2937
Query 222 ATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCA 281
||||||||||||||||||||||||||| ||||| |||| |||||||||| || |||
Sbjct 2936 GTTGTCAGAGGTGAAATTCTTGGATTTACGCAAGACGAACTTCTGCGAAAGCATTTGCCA 2877
Query 282 AGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||||||||||||||||||| ||||||||||| ||||
Sbjct 2876 AGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 2841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915162458496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |