Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2680 363 7e-98 >seq2680 Length=3449 Score = 363 bits (402), Expect = 7e-98 Identities = 494/665 (74%), Gaps = 33/665 (5%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||||| |||||||||||||||||| |||| | || ||||||| | ||||| | Sbjct 1162 TTCCACGAGTCGGGTTGTTTGGGAATGCAGCCCTAATTTGGTGGTAAATCCCATCTAAGG 1103 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||| |||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 1102 CTAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 1043 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||| ||||||||| |||||| | |||||||||||| ||||||| ||| | | | | Sbjct 1042 TTGAAAAGAGAGTCAAAAAGTGCTTGAAATTGTTGAGGGGGAAGCCATTGGATCGCGTGT 983 Query 214 -TGCCCGCAGTTGCTCAACCGGCCCCT-CG-GCCGGTGCACTCTTCTGCGGTCAGGCCAG 270 ||| | ||| |||||| ||| | || |||| || | | | ||| | | || ||| Sbjct 982 GTGCGCCCAG--GCTCAAGCGGTTCTAACGAGCCGTTGAA-TGTGCTGGGTGCTGGTCAG 926 Query 271 CATCAGCTCG----GGCGGTCGGATAAAGGCCCCGGGAATGTGGCC--CCCTTCGGGGGG 324 ||| | | | ||||| || || | | ||||| || | ||| | | | Sbjct 925 -ATCGGGTTGCTTTGGCGG---GACAACCGTC--GGGAACGTAGGTAGCCCGGCCGATGC 872 Query 325 TGTTATAGC--CCGGGGTGGAATGCGGCCCGCCTGGACTGAGGT--CCGCGCTCCGGCTA 380 | ||| || |||| |||| | | | || | || || | ||| ||| | Sbjct 871 CGCCGAAGCGACCAAGGTGTAATG-GTCGCTCC-GTCCTTCGGGAACTGCG-TCCAAA-A 816 Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 |||| ||||| || ||| || ||||||||||| |||||||||| |||||||||||| Sbjct 815 GGAT-CTGGCAGAAGCGTTTCAATGGGCCCGTCTTGAAACACGGACCGAGGAGTCTAACA 757 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAA 500 ||||| |||||||||||| |||||||| |||| || || ||| || ||||| Sbjct 756 GTTATGCAAGTGTTTGGGTGGTAAACCCGTACGCGCAAGTAACCTGACTGG---TGGGAG 700 Query 501 CCCGT-GAGGGTGCACCATCGACCGATCCTGATGT-CTTCGGATGGATTTGAGTAAGAGC 558 | | ||| ||||||||||||||| | ||| | || || | || ||||||| |||| Sbjct 699 GGCTTCGAGCCTGCACCATCGACCGACCATGAGCTTCTGCGAAAGG-TTTGAGTGCGAGC 641 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 640 ATACCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGTGAAGCCAGAGGAAA 581 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 |||||||||||||||| || || ||| ||||||||||| | || | ||||||||||| Sbjct 580 CTCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTATAGG 521 Query 679 GGCGA 683 ||||| Sbjct 520 GGCGA 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079912012100