Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016-
04-26] 4,102 sequences; 141,916,335 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 363 7e-98
>seq2680
Length=3449
Score = 363 bits (402), Expect = 7e-98
Identities = 494/665 (74%), Gaps = 33/665 (5%)
Strand=Plus/Minus
Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93
||| |||||||| |||||||||||||||||| |||| | || ||||||| | ||||| |
Sbjct 1162 TTCCACGAGTCGGGTTGTTTGGGAATGCAGCCCTAATTTGGTGGTAAATCCCATCTAAGG 1103
Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153
||||||| |||| |||||||||||||| ||||||| |||| ||||||||||||| |||
Sbjct 1102 CTAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 1043
Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213
||| ||||||||| |||||| | |||||||||||| ||||||| ||| | | | |
Sbjct 1042 TTGAAAAGAGAGTCAAAAAGTGCTTGAAATTGTTGAGGGGGAAGCCATTGGATCGCGTGT 983
Query 214 -TGCCCGCAGTTGCTCAACCGGCCCCT-CG-GCCGGTGCACTCTTCTGCGGTCAGGCCAG 270
||| | ||| |||||| ||| | || |||| || | | | ||| | | || |||
Sbjct 982 GTGCGCCCAG--GCTCAAGCGGTTCTAACGAGCCGTTGAA-TGTGCTGGGTGCTGGTCAG 926
Query 271 CATCAGCTCG----GGCGGTCGGATAAAGGCCCCGGGAATGTGGCC--CCCTTCGGGGGG 324
||| | | | ||||| || || | | ||||| || | ||| | | |
Sbjct 925 -ATCGGGTTGCTTTGGCGG---GACAACCGTC--GGGAACGTAGGTAGCCCGGCCGATGC 872
Query 325 TGTTATAGC--CCGGGGTGGAATGCGGCCCGCCTGGACTGAGGT--CCGCGCTCCGGCTA 380
| ||| || |||| |||| | | | || | || || | ||| ||| |
Sbjct 871 CGCCGAAGCGACCAAGGTGTAATG-GTCGCTCC-GTCCTTCGGGAACTGCG-TCCAAA-A 816
Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440
|||| ||||| || ||| || ||||||||||| |||||||||| ||||||||||||
Sbjct 815 GGAT-CTGGCAGAAGCGTTTCAATGGGCCCGTCTTGAAACACGGACCGAGGAGTCTAACA 757
Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAA 500
||||| |||||||||||| |||||||| |||| || || ||| || |||||
Sbjct 756 GTTATGCAAGTGTTTGGGTGGTAAACCCGTACGCGCAAGTAACCTGACTGG---TGGGAG 700
Query 501 CCCGT-GAGGGTGCACCATCGACCGATCCTGATGT-CTTCGGATGGATTTGAGTAAGAGC 558
| | ||| ||||||||||||||| | ||| | || || | || ||||||| ||||
Sbjct 699 GGCTTCGAGCCTGCACCATCGACCGACCATGAGCTTCTGCGAAAGG-TTTGAGTGCGAGC 641
Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 640 ATACCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGTGAAGCCAGAGGAAA 581
Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678
|||||||||||||||| || || ||| ||||||||||| | || | |||||||||||
Sbjct 580 CTCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTATAGG 521
Query 679 GGCGA 683
|||||
Sbjct 520 GGCGA 516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079912012100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |