Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016-
04-26] 4,102 sequences; 141,916,335 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq2624 122 1e-25
>seq2624
Length=3676
Score = 122 bits (134), Expect = 1e-25
Identities = 176/248 (71%), Gaps = 23/248 (9%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| ||||||||||||| || ||| | | ||| | | ||| ||
Sbjct 2168 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATTTTGTCTTTC-GACTTTGCGG 2226
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
||||||||||||| |||||||||||| | || || ||||||||
Sbjct 2227 AGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCC----------- 2275
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
| || || || ||| |||||||| ||||||||||||||||| ||||||||
Sbjct 2276 -----TTTTT----AG-AG-GGCGCCCCTTCTTCCGAAGTTACGGGGCCAGTTTGCCGAG 2324
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
||||||| | ||||| | || | |||| |||||||||||| | ||||||||||||
Sbjct 2325 TTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTACCAACCTACCTGTGTCGGT 2384
Query 241 TTACGGTA 248
|| ||||
Sbjct 2385 TTCAGGTA 2392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694372405846
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |