Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2624 122 1e-25 >seq2624 Length=3676 Score = 122 bits (134), Expect = 1e-25 Identities = 176/248 (71%), Gaps = 23/248 (9%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || ||| | | ||| | | ||| || Sbjct 2168 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATTTTGTCTTTC-GACTTTGCGG 2226 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| | || || |||||||| Sbjct 2227 AGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCC----------- 2275 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||| |||||||| ||||||||||||||||| |||||||| Sbjct 2276 -----TTTTT----AG-AG-GGCGCCCCTTCTTCCGAAGTTACGGGGCCAGTTTGCCGAG 2324 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | ||||| | || | |||| |||||||||||| | |||||||||||| Sbjct 2325 TTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTACCAACCTACCTGTGTCGGT 2384 Query 241 TTACGGTA 248 || |||| Sbjct 2385 TTCAGGTA 2392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694372405846