Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016-
04-26] 4,102 sequences; 141,916,335 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq2624 262 1e-67
seq1700 86.0 2e-14
>seq2624
Length=3676
Score = 262 bits (290), Expect = 1e-67
Identities = 309/417 (74%), Gaps = 32/417 (8%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCG-ATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71
|||||||||| | | || ||||||| ||| ||| ||||||||||| |||||
Sbjct 1982 GCATCTTCACGGGACAAGTCTATTTCACCGAGCCTCTCTCCGAGACAGCGCCCAGATCGT 2041
Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131
|||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct 2042 TACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGGACCGTT 2101
Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC----TTCGCGTTAGCTAACC 187
|| ||||||||||||||| |||||||||||| || ||| ||| | | |||||
Sbjct 2102 ATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTTTTTCTTGCGAAATAACC 2161
Query 188 CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTT 247
| ||||||||||||||| |||||||||||| ||| ||| | |||||| ||
Sbjct 2162 AACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATTTTGTCTTTCGACTT 2221
Query 248 TGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGA 307
||| ||| |||||||||| ||||||||||| |||||||| || ||||| | |
Sbjct 2222 TGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACC--CTT-- 2277
Query 308 GCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTT 367
||| ||| ||||| |||||| |||||||||||| |||
Sbjct 2278 -TTTA--GAG-------------------GGCGCCCCTTCTTCCGAAGTTACGGGGCCAG 2315
Query 368 TTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACC 424
|||||| |||||||| |||||||||| || ||||||||||||||| ||||||
Sbjct 2316 TTTGCCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTA-CCAACC 2371
>seq1700
Length=13672
Score = 86.0 bits (94), Expect = 2e-14
Identities = 104/139 (75%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCA-TCGT 71
|||||| ||| | |||| || ||||| || || |||||||||| ||| || ||||
Sbjct 8223 GCATCTGCACGGACATTTAAAATTCACAGATTCCACCCTGGAGACAGC-CCGACAGTCGT 8165
Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131
| ||||||| |||||| | ||| ||||||| |||||||||||||||| |||
Sbjct 8164 TCAGCCATTCATGCAGGATACCAATTAAGTATCAAGGAACTTCGCTACCTTAGGACAGTT 8105
Query 132 ATTGTTACGGCCGCCGTTT 150
|| ||| | ||||||||||
Sbjct 8104 ATGGTTGCTGCCGCCGTTT 8086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260748281984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |