Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2624 262 1e-67 seq1700 86.0 2e-14 >seq2624 Length=3676 Score = 262 bits (290), Expect = 1e-67 Identities = 309/417 (74%), Gaps = 32/417 (8%) Strand=Plus/Plus Query 13 GCATCTTCACAGCG-ATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||| | | || ||||||| ||| ||| ||||||||||| ||||| Sbjct 1982 GCATCTTCACGGGACAAGTCTATTTCACCGAGCCTCTCTCCGAGACAGCGCCCAGATCGT 2041 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||| Sbjct 2042 TACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGGACCGTT 2101 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC----TTCGCGTTAGCTAACC 187 || ||||||||||||||| |||||||||||| || ||| ||| | | ||||| Sbjct 2102 ATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTTTTTCTTGCGAAATAACC 2161 Query 188 CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTT 247 | ||||||||||||||| |||||||||||| ||| ||| | |||||| || Sbjct 2162 AACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATTTTGTCTTTCGACTT 2221 Query 248 TGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGA 307 ||| ||| |||||||||| ||||||||||| |||||||| || ||||| | | Sbjct 2222 TGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACC--CTT-- 2277 Query 308 GCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTT 367 ||| ||| ||||| |||||| |||||||||||| ||| Sbjct 2278 -TTTA--GAG-------------------GGCGCCCCTTCTTCCGAAGTTACGGGGCCAG 2315 Query 368 TTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACC 424 |||||| |||||||| |||||||||| || ||||||||||||||| |||||| Sbjct 2316 TTTGCCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTA-CCAACC 2371 >seq1700 Length=13672 Score = 86.0 bits (94), Expect = 2e-14 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCA-TCGT 71 |||||| ||| | |||| || ||||| || || |||||||||| ||| || |||| Sbjct 8223 GCATCTGCACGGACATTTAAAATTCACAGATTCCACCCTGGAGACAGC-CCGACAGTCGT 8165 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 | ||||||| |||||| | ||| ||||||| |||||||||||||||| ||| Sbjct 8164 TCAGCCATTCATGCAGGATACCAATTAAGTATCAAGGAACTTCGCTACCTTAGGACAGTT 8105 Query 132 ATTGTTACGGCCGCCGTTT 150 || ||| | |||||||||| Sbjct 8104 ATGGTTGCTGCCGCCGTTT 8086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260748281984