Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2866 333 8e-89 seq394 95.1 4e-17 >seq2866 Length=2748 Score = 333 bits (368), Expect = 8e-89 Identities = 371/491 (76%), Gaps = 12/491 (2%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| ||||||||||||||||||||||||||| |||||||||||||| ||| || | Sbjct 1674 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGACCTGCACAAGCGGTGGATTATGCGGAT 1733 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||||||||||||||||||| ||||||| | || | |||||| | Sbjct 1734 TAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACATGCCAAGAATCTTCTAGAAA 1793 Query 127 TAGAGGTTTCCCCTTCGGGGGA-CAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGT 185 | |||| | || | | ||| | | |||| || ||||||| |||||||||||||| Sbjct 1794 TGGAGGAGTGCC-TGCAAAGGAGCTTGGACACAGATGGTGCATGGCTGTCGTCAGCTCGT 1852 Query 186 GTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA 245 | | |||| ||| ||||||||||| ||||||||||||||| ||||||||| | Sbjct 1853 GCCTTGAGGTGTATGGTTAAGTCCCATAACGAGCGCAACCCTCGTCTTTAGTTGCCTT-- 1910 Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 | ||| ||||| ||||||| ||| || | ||||||||||| ||| ||||| Sbjct 1911 ------TTGGCTCTCTAGAGAGACTGCCAGTGT-AAGCTGGAGGAAGGTGAGGATGACGT 1963 Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| ||| |||||| |||| ||||| ||| ||| |||||||| |||| Sbjct 1964 CAAGTCAGCATGCCTCTTACACCCTGGGCGTCACGCGTAATACAATGGTTGGGACAATCA 2023 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 | ||||| | |||| | | ||| |||| |||| ||||||||||||||||||| Sbjct 2024 GTAGCGATCCTGCGAAGGCTAGCCAATCTGTTAAACCCAACCTCAGTTCGGATTGTAGTC 2083 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCT-ACGGTG 484 || |||||||||| ||||||| ||||||||||||||||| ||||||| | | ||||| Sbjct 2084 TGAAACTCGACTACATGAAGCCGGAATCGCTAGTAATCGCCAATCAGCAGGGTGGCGGTG 2143 Query 485 AATACGTTCCC 495 ||||||||||| Sbjct 2144 AATACGTTCCC 2154 >seq394 Length=106979 Score = 95.1 bits (104), Expect = 4e-17 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| Sbjct 94086 CTCAGTTCGGATTGTAGTCTGAAACTCGACTACATGAAGCCGGAATCGCTAGTAATCGCC 94027 Query 467 GATCAGC 473 |||||| Sbjct 94026 AATCAGC 94020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503938305920