Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2801 392 6e-107 >seq2801 Length=2965 Score = 392 bits (434), Expect = 6e-107 Identities = 264/294 (90%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTC-ATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||||| || | || || || | ||||||||||||||||||||||||| Sbjct 1569 TACTGAGCCGAATTACTATGGCGGGATCGATCCAACAGTAGGGTAAAACTAACCTGTCTC 1510 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1509 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 1450 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1449 AATGCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 1390 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1389 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCT 1330 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| | ||||||||||||||||||| |||||| |||||||||| Sbjct 1329 TCAAATCCCGAAAGGCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 1276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854364952512