Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016-
04-26] 4,102 sequences; 141,916,335 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq2866 232 1e-58
seq83 89.7 1e-15
>seq2866
Length=2748
Score = 232 bits (256), Expect = 1e-58
Identities = 237/308 (77%), Gaps = 16/308 (5%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||| ||||||||||||
Sbjct 1212 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTC 1154
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 1153 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCT 1094
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208
|| |||||| |||||||| || ||||| |||||||||||||||| ||| | || | |
Sbjct 1093 ACTGATCGTGGCCTTGGTAGGCTTTTACCCCACCAACTAGCTAATCAGACGCAAGCCCCT 1034
Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTC-CCGTAGGACGTATGCGGTATTAG 267
|| | ||| | | || ||||| | || || |||| ||||||||
Sbjct 1033 CTTTTGGCG-----------GTTTCC---CTTTCACTCCTCAGCTATTATGGGGTATTAG 988
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGT 327
| | |||||| | |||||||||| | | ||| || ||| || || |||| |||||||
Sbjct 987 CAACAGTTTCCCGATGTTATCCCCCTCCAAAAGGTAGGTTCTTACGCGTTACGCACCCGT 928
Query 328 CCGCCGCT 335
||||| ||
Sbjct 927 CCGCCACT 920
>seq83
Length=234864
Score = 89.7 bits (98), Expect = 1e-15
Identities = 71/83 (86%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 33 CGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGT 92
|||||||| || |||||||||||||||||| | || ||||| || |||||||||||||
Sbjct 56906 CGGCATTG-CTCCGTCAGGCTTTCGCCCATTG-CGAAAATTCCTCAATGCTGCCTCCCGT 56963
Query 93 AGGAGTCTGGACCGTGTCTCAGT 115
|| ||||||| |||||| |||||
Sbjct 56964 AGCAGTCTGGGCCGTGTATCAGT 56986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071956026560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |