Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2866 232 1e-58 seq83 89.7 1e-15 >seq2866 Length=2748 Score = 232 bits (256), Expect = 1e-58 Identities = 237/308 (77%), Gaps = 16/308 (5%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || ||||| |||||||||||| Sbjct 1212 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTC 1154 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| | Sbjct 1153 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCT 1094 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||||| |||||||| || ||||| |||||||||||||||| ||| | || | | Sbjct 1093 ACTGATCGTGGCCTTGGTAGGCTTTTACCCCACCAACTAGCTAATCAGACGCAAGCCCCT 1034 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTC-CCGTAGGACGTATGCGGTATTAG 267 || | ||| | | || ||||| | || || |||| |||||||| Sbjct 1033 CTTTTGGCG-----------GTTTCC---CTTTCACTCCTCAGCTATTATGGGGTATTAG 988 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGT 327 | | |||||| | |||||||||| | | ||| || ||| || || |||| ||||||| Sbjct 987 CAACAGTTTCCCGATGTTATCCCCCTCCAAAAGGTAGGTTCTTACGCGTTACGCACCCGT 928 Query 328 CCGCCGCT 335 ||||| || Sbjct 927 CCGCCACT 920 >seq83 Length=234864 Score = 89.7 bits (98), Expect = 1e-15 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 33 CGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGT 92 |||||||| || |||||||||||||||||| | || ||||| || ||||||||||||| Sbjct 56906 CGGCATTG-CTCCGTCAGGCTTTCGCCCATTG-CGAAAATTCCTCAATGCTGCCTCCCGT 56963 Query 93 AGGAGTCTGGACCGTGTCTCAGT 115 || ||||||| |||||| ||||| Sbjct 56964 AGCAGTCTGGGCCGTGTATCAGT 56986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071956026560