Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2624 282 2e-73 >seq2624 Length=3676 Score = 282 bits (312), Expect = 2e-73 Identities = 349/470 (74%), Gaps = 23/470 (5%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||| ||||||| | | |||| |||||| |||| Sbjct 3178 CGCTGCGCCTCAACGCATTTCGGGGAGATCCAGCTAGCTCCGAGTTCGATTGGAATTTCT 3237 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 ||||||| |||| |||||| | | |||||||| | || ||||||||||||||| | Sbjct 3238 CCCCTATTCACAACTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGTCCTCCACTTAG 3297 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGT 313 | |||| ||||||||||| |||| ||||||||| | |||||||| | || Sbjct 3298 TGTTACAAAAGCTTCAACCTGGTCATGAATAGATCACCCGGGTTCGGGTCCATAAGAAGT 3357 Query 314 G-CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--CCCACACGGGTTAA 370 | ||| | |||||||||||| |||||||||||||| |||||| | |||| Sbjct 3358 GACCATT--TACGCCCTATTCAGACTCGCTTTCGCTTGGGCTACGGATTGAATTCCTTAA 3415 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | || |||| |||||||||||||| |||||||| |||| || Sbjct 3416 CCCAGC--CACTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GGC 3470 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | ||| | ||| | || | ||| | ||||||||||||| || ||||||||| Sbjct 3471 TCTTAA----CCCTT------CCACTGCTTGCAAGCACATGGTTTCATGTTCTATTTCAC 3520 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 ||||| ||||||| ||||||||| ||||||| ||||||| | ||||||||||||| | Sbjct 3521 TCCCCAACAGGGGTTCTTTTCACCGTTCCCTCGCGGTACTATTTCGCTATCGGTCACTCA 3580 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||| ||||||| |||| |||||||| |||||||| ||| |||||| Sbjct 3581 GGAATATTTAGCCTTACGAGGTGGTCCTCGCAGATTCATACGGGATTTCA 3630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817525442048