Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016-
04-26] 4,102 sequences; 141,916,335 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq2624 203 8e-50
seq2680 75.2 3e-11
>seq2624
Length=3676
Score = 203 bits (224), Expect = 8e-50
Identities = 311/424 (73%), Gaps = 22/424 (5%)
Strand=Plus/Plus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| || |||| |||| |||| | ||||||||| ||||||||||||||||| ||||
Sbjct 3240 CCTATTCACAACTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGTCCTCCACTTAG 3297
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| ||||| || ||| ||||||| ||| | ||||||| ||||| || |||||| ||
Sbjct 3298 T-GTTACAAAAGCTT-CAACCTGGTCAT-GAATAGATCACCCGGGTT-CGGGTCCATAAG 3353
Query 124 CCAGCGACTAG--ACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT----ATTCG 177
|| ||| | |||||||| | ||||||||||| |||| | || | ||||
Sbjct 3354 A-AGTGACCATTTACGCCCTATTCAGACTCGCTTT-CGCTTGGGCTACGGATTGAATTCC 3411
Query 178 GTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC 237
|||| | |||||| ||||||||| | | |||| | ||| ||| |||| ||||
Sbjct 3412 -TTAACCCA-GCCACTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGG 3469
Query 238 CAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCT 297
| || || |||||||||| | ||| | ||||||| | |||||||||||||||
Sbjct 3470 CTCTTAACC---CTTCCACTGCTTGCAAGCACATGGTTTCATGTTCTATTTCACTCCCCA 3526
Query 298 CTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGT 357
| |||||||||||| || ||||||| |||||||| ||| |||||||||| |||| | |
Sbjct 3527 A-CAGGGGTTCTTTTCACCGTTCCCTCGCGGTACTATTTCGCTATCGGTCACTCAGGAAT 3585
Query 358 ATTTAGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTA 416
|||||||||| |||| |||||| | || ||||| || |||| ||||| || | |||
Sbjct 3586 ATTTAGCCTTACGAGG-TGGTCCTCGCAGATTCATACGGGATTTCACGTGCCCCATACTA 3644
Query 417 CTCG 420
||||
Sbjct 3645 CTCG 3648
>seq2680
Length=3449
Score = 75.2 bits (82), Expect = 3e-11
Identities = 56/66 (85%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364
||||||||| ||||||||||||||||| |||| ||||||||| || ||||||||||
Sbjct 1044 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCAGTATTTAGC 1103
Query 365 CTTGGA 370
||| ||
Sbjct 1104 CTTAGA 1109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241549069568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |