Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2624 203 8e-50 seq2680 75.2 3e-11 >seq2624 Length=3676 Score = 203 bits (224), Expect = 8e-50 Identities = 311/424 (73%), Gaps = 22/424 (5%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || || |||| |||| |||| | ||||||||| ||||||||||||||||| |||| Sbjct 3240 CCTATTCACAACTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGTCCTCCACTTAG 3297 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| || ||| ||||||| ||| | ||||||| ||||| || |||||| || Sbjct 3298 T-GTTACAAAAGCTT-CAACCTGGTCAT-GAATAGATCACCCGGGTT-CGGGTCCATAAG 3353 Query 124 CCAGCGACTAG--ACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT----ATTCG 177 || ||| | |||||||| | ||||||||||| |||| | || | |||| Sbjct 3354 A-AGTGACCATTTACGCCCTATTCAGACTCGCTTT-CGCTTGGGCTACGGATTGAATTCC 3411 Query 178 GTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC 237 |||| | |||||| ||||||||| | | |||| | ||| ||| |||| |||| Sbjct 3412 -TTAACCCA-GCCACTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGG 3469 Query 238 CAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCT 297 | || || |||||||||| | ||| | ||||||| | ||||||||||||||| Sbjct 3470 CTCTTAACC---CTTCCACTGCTTGCAAGCACATGGTTTCATGTTCTATTTCACTCCCCA 3526 Query 298 CTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGT 357 | |||||||||||| || ||||||| |||||||| ||| |||||||||| |||| | | Sbjct 3527 A-CAGGGGTTCTTTTCACCGTTCCCTCGCGGTACTATTTCGCTATCGGTCACTCAGGAAT 3585 Query 358 ATTTAGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTA 416 |||||||||| |||| |||||| | || ||||| || |||| ||||| || | ||| Sbjct 3586 ATTTAGCCTTACGAGG-TGGTCCTCGCAGATTCATACGGGATTTCACGTGCCCCATACTA 3644 Query 417 CTCG 420 |||| Sbjct 3645 CTCG 3648 >seq2680 Length=3449 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| || |||||||||| Sbjct 1044 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCAGTATTTAGC 1103 Query 365 CTTGGA 370 ||| || Sbjct 1104 CTTAGA 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241549069568