Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2866 228 2e-57 seq83 80.6 5e-13 >seq2866 Length=2748 Score = 228 bits (252), Expect = 2e-57 Identities = 233/306 (76%), Gaps = 16/306 (5%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || || |||||||||||||||||| Sbjct 1207 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 1148 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 1147 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 1088 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||| | |||||| |||| ||| | ||||||||| |||||| | ||| ||||| ||||| Sbjct 1087 CGTGGCCTTGGTAGGCTTTTACCCCACCAACTAGCTAATCAGACGCAAGCCCCTCTTTTG 1028 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||| | |||| | ||||| | |||||| ||||||||| Sbjct 1027 GCGGTTTCCCTTT---------------CACTCCTCAGCTATTATGGGGTATTAGCAACA 983 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | ||||| || ||| ||||| ||||| || ||| ||||| ||||||||||| Sbjct 982 GTTTCCCGATGTTATCCCCCTCCAAAAGGTAGGTT-CTTACGCGTTACGCACCCGTCCGC 924 Query 301 CACTAA 306 |||||| Sbjct 923 CACTAA 918 >seq83 Length=234864 Score = 80.6 bits (88), Expect = 5e-13 Identities = 67/81 (83%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || || || ||||||||||||||| Sbjct 56907 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGAAA-ATTCCTCAATGCTGCCTCCCGTAG 56965 Query 61 GAGTCTGGGCCGTGTCTCAGT 81 |||||||||||||| ||||| Sbjct 56966 CAGTCTGGGCCGTGTATCAGT 56986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998359045632