Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq2866 188 1e-45 >seq2866 Length=2748 Score = 188 bits (208), Expect = 1e-45 Identities = 214/286 (75%), Gaps = 1/286 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | |||| | |||||||||| ||||||||| || Sbjct 1555 GCTTTCGTTTCTCAGTGTCAGTCTTGGCCCAGTAGAGCGCCTTCGCCGCTGGTGTTCTTC 1496 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||| |||||||||||||||||| |||| |||||||| | ||||| | |||||||| Sbjct 1495 CATATCTCTACGCATTTCACCGCTCCACATGGAATTCCCTCTACCTCTACCACACTCAAG 1436 Query 126 AAAAACAGTT-TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 ||| || | ||| ||| ||||||||| | ||| ||| ||||| | Sbjct 1435 CTCGTGAGTACTCCACTGCCTGCTCGAGGTTGAGCCTCGATATTTGACAGTAGACTTTAC 1376 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||||| | |||||||||||||||| ||| ||||| Sbjct 1375 GAGCCACCTACAAACGCTTTACGCCCAATCATTCCGGATAACGCTTGCTCCCTCTGTATT 1316 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||| ||||||||| |||||||| |||| || Sbjct 1315 ACCGCGGCTGCTGGCACAGAGTTAGCCGGAGCTTATTCATCAGATA 1270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828767065042