Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2866 268 2e-69 seq83 91.5 4e-16 >seq2866 Length=2748 Score = 268 bits (296), Expect = 2e-69 Identities = 307/411 (75%), Gaps = 25/411 (6%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| | || || ||||| || | |||||||||| ||| | |||||||| |||||||| Sbjct 1238 TTTACGAACCACAGTCCTTCATCCTTCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 1179 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1178 GCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 1119 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| |||||| |||| ||| ||| ||||||| ||| Sbjct 1118 GGCTGATCATCCTCTCAGACCAGCTACTGATCGTGGCCTTGGTAGGCTTTTACCCCACCA 1059 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | || | ||| ||| |||| || Sbjct 1058 ACTAGCTAATCAGACGCAAGCCCCTCTTTT-------GGC-----GGTTTCCCT-TTCAC 1012 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | ||||| ||||||||| || |||||| | |||||||||||||| ||| | Sbjct 1011 TCCTCAGCTATTATGGGGTATTAGCAACAGTTTCCCGATGTTATCCCCCTCCAAAAGGTA 952 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | ||| | | |||| ||||||||||||||| || | || | ||| |||| Sbjct 951 GGTTCTTACGCGTTACGCACCCGTCCGCCACTAACACATCTAATTA--AAGATGCT---- 898 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 897 -----CGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 852 >seq83 Length=234864 Score = 91.5 bits (100), Expect = 4e-16 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 35 CGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTA 94 |||||| ||| | |||||||| ||||||||| | || ||||| || |||||||||||||| Sbjct 56906 CGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGAAA-ATTCCTCAATGCTGCCTCCCGTA 56964 Query 95 GGAGTCTGGACCGTGTCTCAGT 116 | ||||||| |||||| ||||| Sbjct 56965 GCAGTCTGGGCCGTGTATCAGT 56986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222349857152