Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016-
04-26] 4,102 sequences; 141,916,335 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq2866 268 2e-69
seq83 91.5 4e-16
>seq2866
Length=2748
Score = 268 bits (296), Expect = 2e-69
Identities = 307/411 (75%), Gaps = 25/411 (6%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
||||| | || || ||||| || | |||||||||| ||| | |||||||| ||||||||
Sbjct 1238 TTTACGAACCACAGTCCTTCATCCTTCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 1179
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || ||||| |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1178 GCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 1119
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||||||||||||| |||||| |||| ||| ||| ||||||| |||
Sbjct 1118 GGCTGATCATCCTCTCAGACCAGCTACTGATCGTGGCCTTGGTAGGCTTTTACCCCACCA 1059
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| | | | || | ||| ||| |||| ||
Sbjct 1058 ACTAGCTAATCAGACGCAAGCCCCTCTTTT-------GGC-----GGTTTCCCT-TTCAC 1012
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | ||||| ||||||||| || |||||| | |||||||||||||| ||| |
Sbjct 1011 TCCTCAGCTATTATGGGGTATTAGCAACAGTTTCCCGATGTTATCCCCCTCCAAAAGGTA 952
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAGCAAGCTGCTTCCT 363
| ||| | | |||| ||||||||||||||| || | || | ||| ||||
Sbjct 951 GGTTCTTACGCGTTACGCACCCGTCCGCCACTAACACATCTAATTA--AAGATGCT---- 898
Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 897 -----CGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 852
>seq83
Length=234864
Score = 91.5 bits (100), Expect = 4e-16
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 35 CGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTA 94
|||||| ||| | |||||||| ||||||||| | || ||||| || ||||||||||||||
Sbjct 56906 CGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGAAA-ATTCCTCAATGCTGCCTCCCGTA 56964
Query 95 GGAGTCTGGACCGTGTCTCAGT 116
| ||||||| |||||| |||||
Sbjct 56965 GCAGTCTGGGCCGTGTATCAGT 56986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222349857152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |