Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016-
04-26] 4,102 sequences; 141,916,335 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq2866 334 2e-89
seq83 86.0 2e-14
>seq2866
Length=2748
Score = 334 bits (370), Expect = 2e-89
Identities = 281/343 (82%), Gaps = 4/343 (1%)
Strand=Plus/Plus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
||||||||||||||||||||| ||||| || ||||||||| |||||||||||| | |
Sbjct 1042 GCGTCTGATTAGCTAGTTGGTGGGGTAAAAGCCTACCAAGGCCACGATCAGTAGCTGGTC 1101
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||||
Sbjct 1102 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 1161
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340
|||| ||||| || | |||||||| ||||||||| | ||||| ||||||||| ||||||
Sbjct 1162 AGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGAAGGATGAA 1221
Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA---TGACGGTACTTGAGGAGG 397
|| || || ||||||| ||| | ||| ||||| || |||||||| ||| ||
Sbjct 1222 GGACTGTGGTTCGTAAACTTCTTTTATCAGAGAAGAAAACATTGACGGTATCTGATGAAT 1281
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| |||||||||| |||||||||||||||||||||| |||| || |||||||||||
Sbjct 1282 AAGCTCCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGAGCAAGCGTTATCCG 1341
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||| | | |||||||||| || |||||||| | | |||||
Sbjct 1342 GAATGA-TTGGGCGTAAAGCGTTTGTAGGTGGCTCGTAAAGTC 1383
>seq83
Length=234864
Score = 86.0 bits (94), Expect = 2e-14
Identities = 69/82 (84%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 246 ACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCA 305
||||| |||||| ||| ||| ||||||||||||||| || ||||| || | ||||||||
Sbjct 56986 ACTGATACACGGCCCAGACTGCTACGGGAGGCAGCATTGAGGAAT-TTTCGCAATGGGCG 56928
Query 306 AAAGCCTGATGCAGCAACGCCG 327
||||||||| | ||||| ||||
Sbjct 56927 AAAGCCTGACGGAGCAATGCCG 56906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497538568448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |