Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2866 334 2e-89 seq83 86.0 2e-14 >seq2866 Length=2748 Score = 334 bits (370), Expect = 2e-89 Identities = 281/343 (82%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||||||||| ||||| || ||||||||| |||||||||||| | | Sbjct 1042 GCGTCTGATTAGCTAGTTGGTGGGGTAAAAGCCTACCAAGGCCACGATCAGTAGCTGGTC 1101 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 1102 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 1161 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||| || | |||||||| ||||||||| | ||||| ||||||||| |||||| Sbjct 1162 AGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGAAGGATGAA 1221 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA---TGACGGTACTTGAGGAGG 397 || || || ||||||| ||| | ||| ||||| || |||||||| ||| || Sbjct 1222 GGACTGTGGTTCGTAAACTTCTTTTATCAGAGAAGAAAACATTGACGGTATCTGATGAAT 1281 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| |||||||||| |||||||||||||||||||||| |||| || ||||||||||| Sbjct 1282 AAGCTCCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGAGCAAGCGTTATCCG 1341 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| | | ||||| Sbjct 1342 GAATGA-TTGGGCGTAAAGCGTTTGTAGGTGGCTCGTAAAGTC 1383 >seq83 Length=234864 Score = 86.0 bits (94), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 246 ACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCA 305 ||||| |||||| ||| ||| ||||||||||||||| || ||||| || | |||||||| Sbjct 56986 ACTGATACACGGCCCAGACTGCTACGGGAGGCAGCATTGAGGAAT-TTTCGCAATGGGCG 56928 Query 306 AAAGCCTGATGCAGCAACGCCG 327 ||||||||| | ||||| |||| Sbjct 56927 AAAGCCTGACGGAGCAATGCCG 56906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497538568448