Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2866 237 4e-60 >seq2866 Length=2748 Score = 237 bits (262), Expect = 4e-60 Identities = 299/408 (73%), Gaps = 16/408 (4%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 ||| || |||| |||||||||| |||||||||||||||||||||| |||| || ||| Sbjct 1274 TGATGAATAAGCTCCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGAGCAAGC 1333 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| | | ||||| || ||| Sbjct 1334 GTTATCCGGAATGATTGGGCGTAAAGCGTTTGTAGGTGGCTCGTAAAGTCTACTGTCAAA 1393 Query 125 GGCTAT---GGCTCAACCCCGGGACTGCTTTTGAA-ACTGCAGGGCTAGAGTGCAGGAGG 180 ||| ||||||||| || | || | || ||| | ||| ||||| | || Sbjct 1394 ---TATCGAGGCTCAACCTCGAGCAGGCAGTGGAGTACTCACGAGCTTGAGTGTGGTAGA 1450 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || | |||||||| ||| |||||||||||||||||| || ||| ||||||||| || Sbjct 1451 GGTAGAGGGAATTCCATGTGGAGCGGTGAAATGCGTAGAGATATGGAAGAACACCAGCGG 1510 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 |||||||| | |||| | |||||||||||| ||||||| ||||| || || Sbjct 1511 CGAAGGCGCTCTACTGGGCCAAGACTGACACTGAGAAACGAAAGCTAAGGGAGTGAATAG 1570 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAA 360 ||||||||||||| ||| || || |||||| ||||| |||| ||| | || || Sbjct 1571 GATTAGATACCCTAGTAATCTTAGCTGTAAACTATGAAGACTAAGTGCTG----CCAAAA 1626 Query 361 GTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||| |||| ||||||||||| Sbjct 1627 G-----CAGTGCTGTAGCTAACGCGTTAAGTCTTCCGCCTGGGGAGTA 1669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203150644736