Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2680 356 4e-96 seq146 145 1e-32 >seq2680 Length=3449 Score = 356 bits (394), Expect = 4e-96 Identities = 267/310 (86%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||| | |||||||||||| ||| | ||| ||||| ||| | |||||||| Sbjct 2504 GAACGAGACCTCAGCCTGCTAAATAGTCAGCCTCGCACCTGCGGGGCGCAGACTTCTTAG 2445 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| ||| | |||| |||||||| |||||| |||||||||||||||||||||| Sbjct 2444 AGGGACTATTGGCGTTTAGCCAATGGAAGTATGAGGCGATAACAGGTCTGTGATGCCCTT 2385 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| ||||||| | | |||||||| Sbjct 2384 AGATGTTCTGGGCCGCACGCGCGCTACACTGACGCGATCAACGAG--CCTGTCCTTGGCC 2327 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | ||| | |||||||||||| || | | |||||| |||||||||| |||||||||||| Sbjct 2326 GAGAGGCCCGGGTAATCTTGTAAACCGC-GTCGTGATGGGGATAGATTATTGCAATTATT 2268 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2267 AGTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 2208 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 2207 GCCCTTTGTA 2198 >seq146 Length=190748 Score = 145 bits (160), Expect = 1e-32 Identities = 112/132 (85%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||| | |||||||||||| ||| | ||| ||||| ||| | |||||||| Sbjct 64882 GAACGAGACCTCAGCCTGCTAAATAGTCAGCCTCGCACCTGCGGGGCGCAGACTTCTTAG 64823 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| ||| | |||| |||||||| |||||| |||||||||||||||||||||| Sbjct 64822 AGGGACTATTGGCGTTTAGCCAATGGAAGTATGAGGCGATAACAGGTCTGTGATGCCCTT 64763 Query 139 AGATGTTCTGGG 150 |||||||||||| Sbjct 64762 AGATGTTCTGGG 64751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947161145856