Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq2624 176 2e-41 >seq2624 Length=3676 Score = 176 bits (194), Expect = 2e-41 Identities = 390/572 (68%), Gaps = 21/572 (4%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACA---GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 |||||| ||| |||||| | ||| || | | |||||||| || |||||||| | Sbjct 3383 CGAGTCTGAATAGGGCGTAAATGGTCACTTCTTATGGACCCGAACCCGGGTGATCTATTC 3324 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||| ||||| ||||| | ||||||| |||||| ||||||| || |||||||||| Sbjct 3323 ATGACCAGGTTGAAGCTTTTGTAACACTAAGTGGAGGACCGAACCGACCGATGTTGAAAA 3264 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 || | ||||||| |||| |||||| |||| | || | |||| ||| ||||||| || Sbjct 3263 ATCGGCGGATGAGTTGTGAATAGGGGAGAAATTCCAATCGAACTCGGAGCTAGCTGGATC 3204 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTAT-CACCATC-GGGGGTAGAGC-ACTGT 235 || |||||| || ||| || || || || ||| |||||| ||| ||||| Sbjct 3203 TCCCCGAAATGCGTTGAGGCGCAGCGGTAACGATGTACAATCTTGGGGTAAAGCTACTGT 3144 Query 236 TATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295 | | | | ||| | | | |||||| | | |||||||| |||| | ||| Sbjct 3143 T-TCGATGCGGGCTGCGAGAGCGGTACCAAGTCGTGGCAAACTCAGAATACAAGATTGTT 3085 Query 296 TTACCG--CGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 || ||| |||||| |||| | |||| | | | | ||||| || | || Sbjct 3084 TT-CCGTAAACCAGTGAGACAGTGGGGGATAAGCTTCATTGTCAAGAGGGAAACAGCCCA 3026 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 || | ||||||||||||| ||||| | ||||||| || || || || || |||| | Sbjct 3025 GATCACCAGCTAAGGCCCCTAAATGGCTGCTAAGTGGAA--AAGGATGTGAGAATGCTTA 2968 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 ||| | |||| ||| |||| |||||||| | | || ||||||||||||| |||||||| Sbjct 2967 AACAACCAGGAAGTTCGCTTAGAAGCAGCTA-CCCTTGAAAGAGTGCGTAATAGCTCACT 2909 Query 474 AGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTG--- 530 || || || ||| || ||| |||| | ||||| | || ||||||| ||| Sbjct 2908 GGTAAAGCGTTCTTGCGCCGACAATGGCCGGG-ACTAAGTAGCCTGCCGAAGCTGTGATA 2850 Query 531 --GGATCATTTAT--ATGATCGGTAGGGGAGC 558 | | |||||| || || ||||||||||| Sbjct 2849 TAGTTTAATTTATAAATTATAGGTAGGGGAGC 2818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689530692608