Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016-
04-26] 4,102 sequences; 141,916,335 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq2624 176 2e-41
>seq2624
Length=3676
Score = 176 bits (194), Expect = 2e-41
Identities = 390/572 (68%), Gaps = 21/572 (4%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCGACA---GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58
|||||| ||| |||||| | ||| || | | |||||||| || |||||||| |
Sbjct 3383 CGAGTCTGAATAGGGCGTAAATGGTCACTTCTTATGGACCCGAACCCGGGTGATCTATTC 3324
Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118
||| ||||| ||||| | ||||||| |||||| ||||||| || ||||||||||
Sbjct 3323 ATGACCAGGTTGAAGCTTTTGTAACACTAAGTGGAGGACCGAACCGACCGATGTTGAAAA 3264
Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178
|| | ||||||| |||| |||||| |||| | || | |||| ||| ||||||| ||
Sbjct 3263 ATCGGCGGATGAGTTGTGAATAGGGGAGAAATTCCAATCGAACTCGGAGCTAGCTGGATC 3204
Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTAT-CACCATC-GGGGGTAGAGC-ACTGT 235
|| |||||| || ||| || || || || ||| |||||| ||| |||||
Sbjct 3203 TCCCCGAAATGCGTTGAGGCGCAGCGGTAACGATGTACAATCTTGGGGTAAAGCTACTGT 3144
Query 236 TATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295
| | | | ||| | | | |||||| | | |||||||| |||| | |||
Sbjct 3143 T-TCGATGCGGGCTGCGAGAGCGGTACCAAGTCGTGGCAAACTCAGAATACAAGATTGTT 3085
Query 296 TTACCG--CGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353
|| ||| |||||| |||| | |||| | | | | ||||| || | ||
Sbjct 3084 TT-CCGTAAACCAGTGAGACAGTGGGGGATAAGCTTCATTGTCAAGAGGGAAACAGCCCA 3026
Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413
|| | ||||||||||||| ||||| | ||||||| || || || || || |||| |
Sbjct 3025 GATCACCAGCTAAGGCCCCTAAATGGCTGCTAAGTGGAA--AAGGATGTGAGAATGCTTA 2968
Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473
||| | |||| ||| |||| |||||||| | | || ||||||||||||| ||||||||
Sbjct 2967 AACAACCAGGAAGTTCGCTTAGAAGCAGCTA-CCCTTGAAAGAGTGCGTAATAGCTCACT 2909
Query 474 AGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTG--- 530
|| || || ||| || ||| |||| | ||||| | || ||||||| |||
Sbjct 2908 GGTAAAGCGTTCTTGCGCCGACAATGGCCGGG-ACTAAGTAGCCTGCCGAAGCTGTGATA 2850
Query 531 --GGATCATTTAT--ATGATCGGTAGGGGAGC 558
| | |||||| || || |||||||||||
Sbjct 2849 TAGTTTAATTTATAAATTATAGGTAGGGGAGC 2818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689530692608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |