Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2624 141 3e-31 >seq2624 Length=3676 Score = 141 bits (156), Expect = 3e-31 Identities = 185/251 (74%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 232 CATCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGT 291 |||||||| |||||||||| || | ||| || || ||||| ||||| || ||| Sbjct 1882 CATCATAGCCTCCCACCTAGGCTGCGCAAGAAAAGCCCAAACCCAATTCCAAGATACAGT 1941 Query 292 GAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTG-C 349 ||| | | |||||||| |||| | | | | ||||||| || | | | Sbjct 1942 CAAGCTTCATAGGGTCTTTCTGTCCAGGTGTAAGTAGTCCGCATCTTCACGGGACAAGTC 2001 Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTC 408 ||||||||| |||| | |||||||| | || |||||||||| |||||||||||| Sbjct 2002 TATTTCACCGAGCCTCTCTCCGAGACAGC-GCCCAGATCGTTACGCCTTTCGTGCAGGTC 2060 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 | ||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||| Sbjct 2061 GAAACTTACTCGACAATGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTC 2120 Query 469 ACTGGGGCTTC 479 || |||||||| Sbjct 2121 ACCGGGGCTTC 2131 Score = 111 bits (122), Expect = 5e-22 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| || |||||| |||||| || Sbjct 459 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTGCACTCAATGTCTGATTTCC 518 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGG 104 |||| ||||||||||||||| |||||||||||| ||||||| Sbjct 519 GTCCAGACTGAGGGAACCTTTGCACGCCTCCGTTACCTTTTGGG 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702330167552