Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2866 196 1e-47 >seq2866 Length=2748 Score = 196 bits (216), Expect = 1e-47 Identities = 220/295 (75%), Gaps = 17/295 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| |||||||||| || ||| ||| Sbjct 1310 GGCTGCTGGCACAGAGTTAGCCGGAGCTTATTCATCAGATAC---------------CGT 1266 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || ||||| ||| || ||||||||||||||| | || || |||||||||||||||| Sbjct 1265 C-AATGTTTTCTTCTCTGATAAAAGAAGTTTACGAACCACAGT-CCTTCATCCTTCACGC 1208 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || |||||||||||||||||||||||| Sbjct 1207 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 1148 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 1147 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 1088 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 ||| | || ||| ||| ||||||| || |||| ||||| ||||| ||| || Sbjct 1087 CGTGGCCTTGGTAGGCTTTTACCCCACCAACTAGCTAATCAGACGCAAGCCCCTC 1033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068756157824