Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4015 425 2e-116 seq2680 201 3e-49 >seq4015 Length=1109 Score = 425 bits (470), Expect = 2e-116 Identities = 316/364 (87%), Gaps = 7/364 (2%) Strand=Plus/Minus Query 145 AACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGT 204 ||||||||| | |||| ||||||| ||||||||||||| ||||||||||||||||||| Sbjct 1109 AACCCTAATCCTCCGTCACCCGTTACCACCATGGTAGGCCTCTATCCTACCATCGAAAGT 1050 Query 205 TGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTT 264 |||||||||||||||||||||||| |||||||||| ||||||| |||||||||| ||||| Sbjct 1049 TGATAGGGCAGAAATTTGAATGAAACATCGCCGGCACAAGGCCGTGCGATTCGTGAAGTT 990 Query 265 ATTATGAATCACCAAGGAGCCCCGAAGGGC---GTTGGTTTTTTATCTAATAAATACACC 321 || |||| ||||| | | | | || || | ||| ||||||||||||||||| | Sbjct 989 ATCATGATTCACCGCAG-GTCGGGCAGAGCCCGGCTGGCCTTTTATCTAATAAATACGTC 931 Query 322 CCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG 380 |||||| |||||| ||| ||| ||| ||||||||||||||||||| |||||||||| | Sbjct 930 CCTTCCAGAAGTC-GGGATTTGCGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAG 872 Query 381 TAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT 440 |||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 871 TAGT-AGGTACCATCAAATAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGT 813 Query 441 ATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTG 500 ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 812 ATAAGCAGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTG 753 Query 501 GCAG 504 |||| Sbjct 752 GCAG 749 >seq2680 Length=3449 Score = 201 bits (222), Expect = 3e-49 Identities = 131/143 (92%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | | | |||| |||| |||||||||||||||||| Sbjct 3308 GTACTCATTCCAATTACCAGACGCGTA-GCGCCCGGTATTGTTATTTATTGTCACTACCT 3366 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 3367 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATC 3426 Query 121 TCTCAGGCTCCCTCTCCGGAATC 143 ||||||||||||||||||||||| Sbjct 3427 TCTCAGGCTCCCTCTCCGGAATC 3449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510338043392