Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 140 3e-28 seq1341 127 2e-24 seq12 98.7 8e-16 >seq2 Length=533353 Score = 140 bits (154), Expect = 3e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| ||||| || || ||||| || ||||||||||| ||||| || || |||||| | Sbjct 428615 CATGAATAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCGCGCGCCTCCTCCTT 428674 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 |||||| || ||||||| ||||||||| ||||| | ||| | ||||| || || | ||| Sbjct 428675 GCCGTGGTTCTTGCGCAGGTCGAGGAAGTCAAACACGTCAGAGTGCCAGGGCTCAATGTA 428734 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 |||||||||| |||| | || |||||||| || ||||| ||||| Sbjct 428735 CATGGCGAACGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTA 428779 >seq1341 Length=23566 Score = 127 bits (140), Expect = 2e-24 Identities = 177/246 (72%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 ||||||| || || || | ||||| || ||| | ||||| |||| ||||||||| Sbjct 14022 CCATCGACACCATCCCCTGCATCAAGCGCAAGGCGCAGTGGGCGCTCAAGTGGATCACCG 13963 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | ||||| | | || | || || || |||| ||||||| ||| ||||| | || | Sbjct 13962 G--CAACGAGTGC-TTCGCCGAGCGCCTGGTGGCGTTTGCGGCGGTTGAGGGCATCTTCT 13906 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 |||| || ||||| | | ||||| ||| | ||||| || || || |||||||| || | Sbjct 13905 TCAGCGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTA 13846 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 ||||| ||| ||| | || || || |||||||||||||| || || ||||| |||| Sbjct 13845 CCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGCATGCACTGCGACTTTGCCTGCTTGC 13786 Query 61646 TATTCA 61651 ||| || Sbjct 13785 TATACA 13780 >seq12 Length=425388 Score = 98.7 bits (108), Expect = 8e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 61195 TTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA 61254 ||||| || | |||||||||||||| || ||||| ||||| ||||| |||||| | Sbjct 262842 TTCATCAAGTACGTGTTGGCGTTCTTCGCAGCTTCAGACGGCATCGTGCTTGAGAACCTG 262901 Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 | ||||||| | | || | || ||| | ||||| || ||||||||| ||||| Sbjct 262902 GCTGCACGTTTCATGAACGACATTCAGGTGCCTGAGGCACGCGCTTTCTACGGTTTCCAA 262961 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTC 61356 |||||||| ||||| || ||| || |||||||| || ||| Sbjct 262962 ATTGCCATCGAGAACGTGCACAGCGAAATGTACAGCGTGCTC 263003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397548124333280