Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq6 105 3e-17 seq916 86.0 3e-11 >seq6 Length=466235 Score = 105 bits (116), Expect = 3e-17 Identities = 131/178 (74%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065 |||||||| || ||| || | |||||||||||||||| |||||| |||| | || Sbjct 44859 GTCATGCGTGAGGGGAAGCCGTGCGGGTTCATGATGAGGTCGGGGCAGATGCCGCGCTCG 44800 Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125 |||| ||||||||||| | || | ||| || |||||||||||||| ||| Sbjct 44799 CTGAACGGCATGTCCTCCTGCCGCACGATGTTGCCCACCACACCCTTCTGGCCGTGCCGG 44740 Query 449126 CTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGCGCAGCACGATCT-TGATG 449182 |||| ||||||||| ||| |||||||| || ||| |||| || ||||| ||||| Sbjct 44739 CTGCTGAACTTGTCGCCCAGCTCGGGCCGCCGCGTGTGCCGCACCAGGATCTGTGATG 44682 >seq916 Length=45755 Score = 86.0 bits (94), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 7/111 (6%) Strand=Plus/Plus Query 222581 GCGGCACGCCGTACTGGACGGCACCCGAGATCATCA-----CCCAAGAGCGCTACACCGA 222635 ||||||||| | |||||| || || ||||||||| |||||| || |||||| Sbjct 15774 GCGGCACGCTGCCCTGGACCGCCCCAGAGATCATCCGCACGCCCAAGGCCGT--CACCGA 15831 Query 222636 GAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGG 222686 ||||||||||||||||||||||||| | | ||||||||| || ||||| Sbjct 15832 GAAGGCCGACGTCTACTCGTTCGGCGTTGTGATGTGGGAGATCTGGACGGG 15882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084626960247396