Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq3865 737 0.0 seq2255 497 1e-135 seq721 111 2e-19 >seq3865 Length=1303 Score = 737 bits (816), Expect = 0.0 Identities = 763/995 (77%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 ||||| |||||| | |||||||| | ||||| | || |||||||||| || || | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 ||||| || | || ||||||| ||||| |||||| |||| ||| | || ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || |||||||| || ||||||||||| || ||||||| | | ||||||||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 |||||| |||||||| || | || |||| ||||| |||||| | |||||||| || | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 |||||||| ||||| | ||||||||| | || ||||||||||||| |||| | | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 160102 CTTCCACTTCCTGATCGGCATCTATGC--CTATATGGGTCGTGAGTGGGAACTCTCTTAC 160159 | ||||||| | | || | | ||| ||| ||||||||||| |||||| | |||| | Sbjct 579 TTGCCACTTCTTATTAGG--TGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 160160 CGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCT 160219 ||| | ||||||||||| |||||| ||| || |||||||| ||||| || |||||| || Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 160220 GCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGT 160279 || || ||| | ||||||| ||||||| ||||| ||||| || | ||||||| | ||| Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 160280 ATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCAT 160339 || ||||||||||| |||| ||| | ||||||||||| |||||||| ||||||||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 160340 CCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCAT 160399 || ||||||||| | ||||||||||| || || ||||| ||| | |||||||| ||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 160400 GGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTAT 160459 || ||| | ||||| ||| | | || | || || || |||| || || ||| | Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 160460 GGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTC 160519 |||||| ||||||||||||||||| || ||||||||||| || || || || ||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 160520 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTC 160579 |||||||| || |||||||| || || || |||||||| || || | ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 160580 GCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTC 160639 |||||||||||||| | || |||||||||||||| | ||| | || || ||||| ||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 160640 AATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAAC 160699 || || || ||||||||||||||||| || | | ||| ||||| | || | ||| Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 160700 ACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAAC 160759 |||||||| ||| | | ||||| ||| | || |||||||| |||||||| |||||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 160760 GCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 160794 || |||||||||||||| ||| | ||| ||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 497 bits (550), Expect = 1e-135 Identities = 729/1023 (71%), Gaps = 14/1023 (1%) Strand=Plus/Plus Query 161512 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCT 161571 |||||||||| | |||||||||| | | ||| |||||||| || || || ||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 161572 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACT 161631 ||| | | || || || |||||| | || | || |||||| | ||||| || ||| Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 161632 TTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAATTTT 161691 || | ||| ||||| || || || | |||| ||| || | || ||| || || Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 161692 CTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTC-TG 161750 | || || || ||| || ||||| | |||| ||| ||| || || |||| || Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 161751 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTT 161810 ||||||||| |||||||| || || | ||| |||||||| || | ||| ||| Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTT 619 Query 161811 TGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGC 161870 | | || | ||||| | || | | | ||||| |||||| | ||||| |||||| | || Sbjct 620 TATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGC 679 Query 161871 TCGTC---TTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGT 161927 ||| ||| | | ||||| ||||| |||||||| ||||||| |||||||||||| Sbjct 680 ACGTTCAGTTAACT---TACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGT 736 Query 161928 TTTTG--TCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCA 161985 || |||| | || | || || ||| | || || || |||||||| || || Sbjct 737 ATTCACTTCAG--TTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCT 794 Query 161986 TCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGG 162045 ||||| |||||||| || ||| | ||| | | ||| | || || |||||||| ||| Sbjct 795 AGTTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGG 854 Query 162046 ACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCT 162105 |||||||| || ||||||||||||||||| || ||| | || |||| |||||| | | | Sbjct 855 ACGCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGT 914 Query 162106 GCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACT 162165 ||||||||||||| |||||||||||||| | | |||| ||||| || || || Sbjct 915 GCTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACA 974 Query 162166 TTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGT 162225 ||| || || || | || |||| || || || ||||| ||||||||||| |||||| Sbjct 975 TTCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGT 1034 Query 162226 TTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATG 162285 |||||||| || ||||||||| ||||||| || || |||||||| || ||||| ||| Sbjct 1035 TTCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATG 1094 Query 162286 CTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTT 162345 | ||||| || || | ||| | |||| |||| ||| | ||||| | || || Sbjct 1095 TTATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGC-ATT 1153 Query 162346 AATCTT-CGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATT 162404 || ||| |||||||||||||| || || || || ||||||||||| || || || || || Sbjct 1154 AAACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTT 1213 Query 162405 TGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACC 162464 ||||| |||||||| || || ||||| | ||||||||| ||||||| ||| |||| | Sbjct 1214 CGAAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGC 1273 Query 162465 AGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGC 162524 || ||||||||||| || |||||||| || ||||| | ||| | |||||||| Sbjct 1274 TCAAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGC 1333 Query 162525 ACT 162527 || Sbjct 1334 TCT 1336 >seq721 Length=61483 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 161000 TTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGA 161059 ||||| |||||||| || ||||| ||||| ||||| | || ||||| ||| | ||| Sbjct 39583 TTGACCTGCCCTACTCTTGCCGTGCCGGTGCCTGCTCAAGCTGCGCTGGCAAGGTCGAGG 39642 Query 161060 GTGGTACTGTAGATCAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGAT 161119 || || || || || ||||| || || ||||||||||||| || ||| || | Sbjct 39643 CCGGCACCGTCGACCAGTCTGACCAGTCCTTCCTGGATGATGGCCAGATTGGCAACGGCT 39702 Query 161120 TTGTCCTGACCTGCGTTGCTTATCCCACTTCTGATGTAACTATTCTTGCCGAGCAAGAAG 161179 | ||||||||||||||||| || ||||| ||||| || || || ||||||| || | Sbjct 39703 TCGTCCTGACCTGCGTTGCGTACCCCACCAGCGATGTGACGATCCTCACCGAGCAGGAGG 39762 Query 161180 AGTCTCTTTACTAA 161193 || || |||||| Sbjct 39763 AGAAGCTGTACTAA 39776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551347728195600