Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq3865 724 0.0 seq2255 563 1e-155 seq292 84.2 3e-11 >seq3865 Length=1303 Score = 724 bits (802), Expect = 0.0 Identities = 751/979 (77%), Gaps = 4/979 (0%) Strand=Plus/Plus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 ||||| || ||| | || |||||| | |||||| | || |||||||||| ||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 188911 ATGATCCCTACGCTTCTCG-CTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCAC 188968 ||||| ||| |||| | | ||||| ||||| |||||| |||| || || || || | Sbjct 340 ATGATTCCTT-GCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTC 397 Query 188969 CCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACA 189028 | || || ||||| || || ||||| ||||| || ||||||| | | || || |||| Sbjct 398 CTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACA 457 Query 189029 ACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCA 189088 ||||||| ||||||||||| ||||| | || ||||| |||||| | ||||||||||| Sbjct 458 ACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAG 517 Query 189089 TCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAG 189148 | |||||||| || || | || |||||| | |||||||||||||||| |||| | | | Sbjct 518 TATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 577 Query 189149 TCTTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACC 189208 | | ||||||| | | || | | | ||||||||||||||| |||||| | |||| || Sbjct 578 TTTGCCACTTCTTATTAGGTGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTCC 637 Query 189209 GTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCG 189268 || | ||||||||||| |||||| | |||||||||||||| |||||||| || | | Sbjct 638 GTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 697 Query 189269 CAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 189328 |||| || | |||| ||| | ||||||||||| |||||||||| ||||| || |||| Sbjct 698 CAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTA 757 Query 189329 TCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 189388 | ||| || ||||||| |||| | || |||||||| || ||||||||||| ||||||| Sbjct 758 TTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACC 817 Query 189389 CCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATG 189448 | ||||||||| | || || || ||||| || |||||||| | ||||| |||||||| | Sbjct 818 CATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACG 877 Query 189449 GTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATG 189508 |||| | ||||| ||||| | | |||||||| ||||||| ||| || ||| || Sbjct 878 GTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTG 937 Query 189509 GTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCG 189568 ||||| || || ||||| |||||||| ||||||||||| |||||||| || || || | Sbjct 938 GTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTG 997 Query 189569 GTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCG 189628 ||||| | || |||||||| || || ||||||||||| |||||| | ||||||||| | | Sbjct 998 GTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 1057 Query 189629 CTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCA 189688 |||| ||||| || | ||||||||||| || || | || | || ||||| |||| Sbjct 1058 CTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCA 1117 Query 189689 ACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACA 189748 |||| || || ||||||||||| ||||| || |||| |||||||||||| | |||| Sbjct 1118 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACA 1177 Query 189749 CATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACG 189808 | ||||| ||| | ||||||||||| | ||||||||||| ||||| || ||||||| Sbjct 1178 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACG 1237 Query 189809 CTCACAACTTCCCTCTTGA 189827 | |||||||||||||| || Sbjct 1238 CGCACAACTTCCCTCTAGA 1256 >seq2255 Length=6208 Score = 563 bits (624), Expect = 1e-155 Identities = 732/1006 (73%), Gaps = 8/1006 (1%) Strand=Plus/Plus Query 189998 TGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTT 190057 ||| |||||| | | ||| || || || || || |||||||| |||||| | || || Sbjct 335 TGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGATTATTACTATT 394 Query 190058 TCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTG 190117 || |||||| ||||| | ||||| ||| | ||||| || || |||| ||| || Sbjct 395 ACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACTTTTGTTACTTCTTG 454 Query 190118 GTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTTACAGCGGCTGT 190177 |||||| ||||| | || | | |||| | || ||| ||| || | || || ||||| Sbjct 455 GTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCTGT 514 Query 190178 GTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TGGGGTCCTGAATCTC 190236 || || || || || |||| ||| ||| || || | ||| |||||||||||| ||| Sbjct 515 TTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATGGGGTCCTGAAGCTC 573 Query 190237 AAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 190296 |||| || || | ||| |||||||| || | ||||||||| | || | |||| Sbjct 574 AAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTTTATTGCTTTACACG 633 Query 190297 GGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA 190356 | | || | | ||||||| |||||| | ||||| |||||| | |||||| ||| | || Sbjct 634 GTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGCACGT-TCA--GTTA 690 Query 190357 TC---CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCT 190413 | ||||| ||||| |||||||| ||||||| |||||| ||||| || | || | Sbjct 691 ACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATTCACTTCAGTTT 750 Query 190414 TTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAG 190473 | | || |||||| | |||||||| |||||||||| || || || ||||| || | Sbjct 751 TCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGTTTTGGTGTTGCCG 810 Query 190474 CGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCC 190533 | |||||||| ||| || | ||||| ||||| ||||| ||||||||||| ||||| |||| Sbjct 811 CAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACGCTTAACCCATTCC 870 Query 190534 ACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGA 190593 |||||||||||||||| ||| | | || | || || | | || || || |||| | Sbjct 871 ACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTA 930 Query 190594 CTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACT 190653 |||| || || || || | |||||| ||||| || ||||| || |||||| || Sbjct 931 CTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATTCCGTGCATTCAACC 990 Query 190654 CTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCT 190713 | || |||| ||||| || || || ||||| ||||| |||||||||||||||||||||| Sbjct 991 CAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTTCTGGTCTCAAATCT 1050 Query 190714 TTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTA 190773 | |||||||| ||| || || | ||||| || ||||| ||| | || || || |||| Sbjct 1051 TCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTTATTCGTACCAGTTA 1110 Query 190774 TGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 190833 ||| | |||| || | || ||| | |||||| | || | ||| | |||||||| | Sbjct 1111 CTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAACTTACGTGCTTACG 1170 Query 190834 ACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAA 190893 |||| || || ||||| || | ||||||||||| ||||||||||| || || ||||| | Sbjct 1171 ACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGAAACGTTCTACACTA 1230 Query 190894 AAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATG 190953 |||| || ||| | ||||||||| ||||| | ||| |||| || || ||||| |||| Sbjct 1231 AAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCGCATG 1290 Query 190954 AGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 | ||| ||||| |||||||||||||| || | || |||||||| Sbjct 1291 AACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 1336 >seq292 Length=128933 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 189044 CTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCT 189103 |||| ||||| | || ||||| |||||| | ||||||||||| | |||||||| || | Sbjct 40791 CTGTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCAT 40732 Query 189104 CACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTC 189159 | | || || ||| | |||||| |||||||| |||| | || || | ||||||| Sbjct 40731 CTTTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTTC 40676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634047487548000